View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11009_low_25 (Length: 251)
Name: NF11009_low_25
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11009_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 26289265 - 26289032
Alignment:
| Q |
1 |
ttacctgtcgaaaacaaacacttgaaaatccaggctaacacatggtgatatatccatatctagttccaatctcctattatgcaaagtttcactacatgtt |
100 |
Q |
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| T |
26289265 |
ttacctgtcgaaaacaaacacttgaaaatccaggctaacacatggtgatatatccatatctagttccaatcttctatcatgcaaagtttcactacatgtt |
26289166 |
T |
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| Q |
101 |
ttgttgatgttctaaattcatattctagaagagtttctatctgcaaatataattagccaaaaccaaattgaattaactcaaataaggcagctcttgtgct |
200 |
Q |
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| T |
26289165 |
ttgttgatgttctaaattcatattctagaagagtttctatctgcaaatataattagccaaaaccaaattgaattaactcaaataaggcagttcttgtgct |
26289066 |
T |
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| Q |
201 |
tttccttatccatagtctcatttctccttgtcaa |
234 |
Q |
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| T |
26289065 |
tttccttatccatagtctcatttctcctcgtcaa |
26289032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 26291185 - 26291057
Alignment:
| Q |
45 |
gtgatatatccatatctagttccaatctcctattatgcaaagtttcactacatgttttgttgatgttctaaattcatattctagaagagtttctatctgc |
144 |
Q |
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| T |
26291185 |
gtgatacatccatgtcttgttccaatcttatcttatttaaagttccactacatgttttgctgacgttccaaattcaaattccggcatagttcct----gc |
26291090 |
T |
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| Q |
145 |
aaatataattagccaaaaccaaattgaattaac |
177 |
Q |
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||| |||||||| |||||||||||||||||||| |
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| T |
26291089 |
aaacataattagtcaaaaccaaattgaattaac |
26291057 |
T |
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