View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11009_low_27 (Length: 244)
Name: NF11009_low_27
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11009_low_27 |
 | |
|
| [»] chr2 (6 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 11424419 - 11424180
Alignment:
| Q |
17 |
accaatgagacattgattccacatgtcaaagttccaa------------agccaccaaactatatagaagaaagatcttcatatatagtcttgattccag |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11424419 |
accaatgagacattgattccacatgtcaaagttccaagtagttagctggagccaacaaactatatagaagaaagatcttcatatatagtcttgattccag |
11424320 |
T |
|
| Q |
105 |
gcctttcagaaacagatcgaatacatcgaattgctattcctaggacctccttcattcccttttctacaactggatttcccatttccgacatcaaagttgc |
204 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11424319 |
gcctttcagaaaccgatcgaatacatcgaattgctattcctaggacctccttcattcccttttctacaactggatttcccatttccgacatcaaagttgc |
11424220 |
T |
|
| Q |
205 |
atcgaaacattccgagcctcgaccttctgctactcgcaat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11424219 |
atcgaaacattccgagcctcgaccttctgctactcgcaat |
11424180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 101 - 244
Target Start/End: Original strand, 9322798 - 9322941
Alignment:
| Q |
101 |
ccaggcctttcagaaacagatcgaatacatcgaattgctattcctaggacctccttcattcccttttctacaactggatttcccatttccgacatcaaag |
200 |
Q |
| |
|
|||||||||| |||||| |||| |||||||||||| ||||||||| |||||| ||| || |||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
9322798 |
ccaggcctttaagaaaccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggatttcccatttctaacatcaaag |
9322897 |
T |
|
| Q |
201 |
ttgcatcgaaacattccgagcctcgaccttctgctactcgcaat |
244 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9322898 |
ttgcatcgaaacattcggagcctcgaccttctgctactcgcaat |
9322941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 32304268 - 32304369
Alignment:
| Q |
138 |
ctattcctaggacctccttcattcccttttctacaactggatttcccatttccgacatcaaagttgcatcgaaacattccgagcctcgaccttctgctac |
237 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
32304268 |
ctattcctatgacctccttcattcccttttctacaactagatttcccatttctgacatcaaagttgcatcaaaacattccgagactcgaccttctgctac |
32304367 |
T |
|
| Q |
238 |
tc |
239 |
Q |
| |
|
|| |
|
|
| T |
32304368 |
tc |
32304369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 119 - 244
Target Start/End: Original strand, 9330828 - 9330953
Alignment:
| Q |
119 |
gatcgaatacatcgaattgctattcctaggacctccttcattcccttttctacaactggatttcccatttccgacatcaaagttgcatcgaaacattccg |
218 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||||| || |||||| ||||||||||||||| | |
|
|
| T |
9330828 |
gatcaaatatatcgaatcgctattcctaggacctcattcattcccttttctacaattagatttcccatttctaacgtcaaagctgcatcgaaacattcgg |
9330927 |
T |
|
| Q |
219 |
agcctcgaccttctgctactcgcaat |
244 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
9330928 |
agcctcgaccttatgctactcgcaat |
9330953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 11425708 - 11425636
Alignment:
| Q |
143 |
cctaggacctccttcattcccttttctacaactggatttcccatttccgacatcaaagttgcatcgaaacatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| ||||||| |
|
|
| T |
11425708 |
cctaggacctccttcattcccttttctacaactggattccccatttctaacatcaaagtagcatcaaaacatt |
11425636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 11425755 - 11425713
Alignment:
| Q |
54 |
agccaccaaactatatagaagaaagatcttcatatatagtctt |
96 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
11425755 |
agccaccaaactatatagaagaaatatcttcatgtatagtctt |
11425713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University