View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11009_low_29 (Length: 238)

Name: NF11009_low_29
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11009_low_29
NF11009_low_29
[»] chr2 (8 HSPs)
chr2 (63-238)||(26289487-26289662)
chr2 (91-229)||(25473487-25473627)
chr2 (172-229)||(31475894-31475951)
chr2 (105-202)||(31607762-31607857)
chr2 (171-229)||(24544010-24544067)
chr2 (172-229)||(21771115-21771172)
chr2 (172-229)||(31483602-31483659)
chr2 (89-218)||(12605177-12605310)
[»] chr5 (4 HSPs)
chr5 (90-201)||(26344434-26344546)
chr5 (172-215)||(23355287-23355330)
chr5 (89-134)||(35749772-35749817)
chr5 (161-193)||(20481930-20481962)
[»] chr7 (1 HSPs)
chr7 (171-227)||(14628688-14628744)
[»] chr3 (3 HSPs)
chr3 (119-229)||(39583675-39583786)
chr3 (171-216)||(45279854-45279899)
chr3 (172-216)||(17132824-17132868)
[»] chr6 (2 HSPs)
chr6 (172-215)||(6470107-6470150)
chr6 (172-212)||(3634429-3634469)
[»] chr4 (1 HSPs)
chr4 (171-216)||(16647174-16647219)
[»] chr8 (1 HSPs)
chr8 (172-216)||(5892718-5892762)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 63 - 238
Target Start/End: Complemental strand, 26289662 - 26289487
Alignment:
Q  63 taatttgcattgcattgataaaagcgtggttcttcaaatcaattacatacattcttttgactcttttctctctatgtttggataattcgagtgtgaaatt 162  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26289662 taatttgcattgcattgataaaagcgtggttcttcaaatcagttagatacattcttttgactcttttctctctatgtttggataattcgagtgtgaaaat 26289563  T
Q  163 ttttgcatgtgatttgtgacccttttttcctatgaaaaacccctatatatacatgagtaaaataacttaataaacc 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26289562 ttttgcatgtgatttgtgacccttttttcctatgaaaaacccctatatatacatgagtaaaataacttaataaacc 26289487  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 229
Target Start/End: Original strand, 25473487 - 25473627
Alignment:
Q  91 gttcttcaaatcaattacatacattcttttgactcttttctctctatgt--ttggataattcgagtgtgaaattttttgcatgtgatttgtgaccctttt 188  Q
    |||| |||||||| |||||||||||||| | | |||||||||| | |||  ||||||||||||||||| | |  ||||| || ||||||||||||| | |    
T  25473487 gttcatcaaatcagttacatacattcttgttagtcttttctctatgtgtgattggataattcgagtgtaagaacttttgtatatgatttgtgacccatat 25473586  T
Q  189 ttcctatgaaaaacccctatatatacatgagtaaaataact 229  Q
    ||||||||||||||   ||||||||||| ||||| ||||||    
T  25473587 ttcctatgaaaaactgttatatatacataagtaagataact 25473627  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 31475894 - 31475951
Alignment:
Q  172 tgatttgtgacccttttttcctatgaaaaacccctatatatacatgagtaaaataact 229  Q
    |||||||||||||||||||||||||||||||  |||||||||||| || |||||||||    
T  31475894 tgatttgtgacccttttttcctatgaaaaactactatatatacattagaaaaataact 31475951  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 31607857 - 31607762
Alignment:
Q  105 ttacatacattcttttgactcttttctctctatgtttggataattcgagtgtgaaattttttgcatgtgatttgtgacccttttttcctatgaaaaac 202  Q
    ||||||||||||| || ||||||||||||||||| | ||||||||||||| ||| |  | ||||   ||||||||||||||| ||||||| |||||||    
T  31607857 ttacatacattctgtt-actcttttctctctatgct-ggataattcgagtatgagaaatcttgctaatgatttgtgacccttatttcctaagaaaaac 31607762  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 24544010 - 24544067
Alignment:
Q  171 gtgatttgtgacccttttttcctatgaaaaacccctatatatacatgagtaaaataact 229  Q
    |||||||||||||| ||||||||||| |||||  |||| ||||||| ||||||||||||    
T  24544010 gtgatttgtgacccgtttttcctatggaaaactactatttatacat-agtaaaataact 24544067  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 21771115 - 21771172
Alignment:
Q  172 tgatttgtgacccttttttcctatgaaaaacccctatatatacatgagtaaaataact 229  Q
    ||||||||||||| | ||| | |||||||||  |||||||||||| ||||||||||||    
T  21771115 tgatttgtgacccctattttcaatgaaaaacttctatatatacataagtaaaataact 21771172  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 31483602 - 31483659
Alignment:
Q  172 tgatttgtgacccttttttcctatgaaaaacccctatatatacatgagtaaaataact 229  Q
    |||||||||||||| ||||| |||| |||||  |||||||||||| || |||||||||    
T  31483602 tgatttgtgaccctcttttcttatgtaaaacttctatatatacataagaaaaataact 31483659  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 12605310 - 12605177
Alignment:
Q  89 tggttcttcaaatcaattacatacattcttttgactctttt----ctctctatgtttggataattcgagtgtgaaattttttgcatgtgatttgtgaccc 184  Q
    |||||| |||||||||||||| |||||||| | | ||||||    |||| |||| || |||||||||||||| | || |||||  | | ||||||||||     
T  12605310 tggttcatcaaatcaattacagacattcttgttattctttttcctctctatatggttagataattcgagtgtaagatcttttgtttatcatttgtgacct 12605211  T
Q  185 ttttttcctatgaaaaacccctatatatacatga 218  Q
     | ||||| |||||||||   |||||||||||||    
T  12605210 ctatttccaatgaaaaacttttatatatacatga 12605177  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 26344434 - 26344546
Alignment:
Q  90 ggttcttcaaatcaattacatacattcttttgactcttttctctctatgtttggataattcgagtgtgaa-attttttgcatgtgatttgtgaccctttt 188  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||| |  |||||||||||||||||||||||  |    
T  26344434 ggttcatcaaatcagttacatacgttcttttgactcttttctctctacgcttggataattcgagtgtgaagaaattttgcatgtgatttgtgaccctaat 26344533  T
Q  189 ttcctatgaaaaa 201  Q
    ||||||| |||||    
T  26344534 ttcctattaaaaa 26344546  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 23355287 - 23355330
Alignment:
Q  172 tgatttgtgacccttttttcctatgaaaaacccctatatataca 215  Q
    ||||||||||||||| ||||||||| ||||| ||||||||||||    
T  23355287 tgatttgtgacccttatttcctatgtaaaactcctatatataca 23355330  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 35749772 - 35749817
Alignment:
Q  89 tggttcttcaaatcaattacatacattcttttgactcttttctctc 134  Q
    |||||| |||||||||||||||||||||||   |||||||||||||    
T  35749772 tggttcatcaaatcaattacatacattcttgatactcttttctctc 35749817  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 20481930 - 20481962
Alignment:
Q  161 ttttttgcatgtgatttgtgacccttttttcct 193  Q
    |||| ||||||||||||||||||||||||||||    
T  20481930 ttttatgcatgtgatttgtgacccttttttcct 20481962  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 14628744 - 14628688
Alignment:
Q  171 gtgatttgtgacccttttttcctatgaaaaacccctatatatacatgagtaaaataa 227  Q
    |||||||||||||||||||| |||||||||||  |||||||||||| || |||||||    
T  14628744 gtgatttgtgaccctttttttctatgaaaaactactatatatacataagaaaaataa 14628688  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 39583786 - 39583675
Alignment:
Q  119 ttgactcttttctctctatg-tttggataattcgagtgtgaa-attttttgcatgtgatttgtgacccttttttcctatgaaaaacccctatatatacat 216  Q
    |||||||||||||||||| | ||||||||||||||||||||| |  |||||||| ||||||| |||    |||||||||||||| |  ||||||||||||    
T  39583786 ttgactcttttctctctacgctttggataattcgagtgtgaagaacttttgcatatgatttgcgacttcattttcctatgaaaatctactatatatacat 39583687  T
Q  217 gagtaaaataact 229  Q
     || |||||||||    
T  39583686 aag-aaaataact 39583675  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 45279899 - 45279854
Alignment:
Q  171 gtgatttgtgacccttttttcctatgaaaaacccctatatatacat 216  Q
    ||||||||||||||||||||| ||||||||||  ||||||||||||    
T  45279899 gtgatttgtgacccttttttcttatgaaaaactactatatatacat 45279854  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 17132824 - 17132868
Alignment:
Q  172 tgatttgtgacccttttttcctatgaaaaacccctatatatacat 216  Q
    |||||||||| || |||||||||||||||||  ||||||||||||    
T  17132824 tgatttgtgaaccgtttttcctatgaaaaactactatatatacat 17132868  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 6470150 - 6470107
Alignment:
Q  172 tgatttgtgacccttttttcctatgaaaaacccctatatataca 215  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  6470150 tgatttgtgacccttttttcctatgaaaaactactatatataca 6470107  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 3634429 - 3634469
Alignment:
Q  172 tgatttgtgacccttttttcctatgaaaaacccctatatat 212  Q
    ||||||||||||| |||||||||||||||||  ||||||||    
T  3634429 tgatttgtgacccgtttttcctatgaaaaactactatatat 3634469  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 16647174 - 16647219
Alignment:
Q  171 gtgatttgtgacccttttttcctatgaaaaacccctatatatacat 216  Q
    |||||||| |||||||||||| ||||||||||  ||||||||||||    
T  16647174 gtgatttgcgacccttttttcttatgaaaaactactatatatacat 16647219  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 5892718 - 5892762
Alignment:
Q  172 tgatttgtgacccttttttcctatgaaaaacccctatatatacat 216  Q
    ||||||||||||| |||||| ||||||||||  ||||||||||||    
T  5892718 tgatttgtgacccgtttttcatatgaaaaactactatatatacat 5892762  T

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