View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11009_low_3 (Length: 589)

Name: NF11009_low_3
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11009_low_3
NF11009_low_3
[»] chr3 (31 HSPs)
chr3 (29-557)||(3618421-3618948)
chr3 (462-564)||(11251950-11252052)
chr3 (481-553)||(51206347-51206421)
chr3 (497-564)||(10954959-10955028)
chr3 (444-547)||(14027959-14028066)
chr3 (463-557)||(8789540-8789638)
chr3 (484-552)||(7928444-7928514)
chr3 (459-552)||(8383218-8383321)
chr3 (444-532)||(11313817-11313907)
chr3 (462-564)||(28917965-28918079)
chr3 (498-553)||(20691327-20691384)
chr3 (481-564)||(45451544-45451629)
chr3 (497-564)||(55401082-55401151)
chr3 (498-564)||(25093510-25093578)
chr3 (490-543)||(27277844-27277897)
chr3 (459-532)||(21479085-21479160)
chr3 (471-564)||(40993318-40993416)
chr3 (442-497)||(750678-750736)
chr3 (483-547)||(1509532-1509598)
chr3 (491-547)||(8039835-8039893)
chr3 (460-495)||(24205103-24205138)
chr3 (490-532)||(4990984-4991026)
chr3 (492-563)||(6780403-6780476)
chr3 (461-495)||(10335348-10335382)
chr3 (444-495)||(15796356-15796409)
chr3 (491-532)||(21211289-21211330)
chr3 (498-535)||(52369783-52369820)
chr3 (498-534)||(21149075-21149111)
chr3 (488-532)||(26508108-26508152)
chr3 (488-532)||(34307797-34307841)
chr3 (490-547)||(49651786-49651845)
[»] chr6 (39 HSPs)
chr6 (459-561)||(28715264-28715368)
chr6 (444-541)||(34225817-34225916)
chr6 (498-563)||(31579211-31579276)
chr6 (465-532)||(33817924-33817991)
chr6 (490-556)||(7977821-7977889)
chr6 (491-564)||(7265576-7265651)
chr6 (462-562)||(34595098-34595208)
chr6 (496-564)||(28152105-28152174)
chr6 (498-545)||(29049893-29049940)
chr6 (488-535)||(34446563-34446610)
chr6 (466-532)||(7569185-7569251)
chr6 (459-547)||(16766658-16766756)
chr6 (490-557)||(19040352-19040421)
chr6 (441-495)||(7938057-7938113)
chr6 (496-545)||(8805576-8805625)
chr6 (481-547)||(9025494-9025562)
chr6 (439-547)||(9107370-9107490)
chr6 (466-535)||(30781308-30781377)
chr6 (459-532)||(5970125-5970200)
chr6 (488-552)||(6898276-6898342)
chr6 (444-558)||(8776962-8777088)
chr6 (485-532)||(20576650-20576697)
chr6 (490-562)||(33001274-33001348)
chr6 (459-547)||(9027139-9027237)
chr6 (489-535)||(12235533-12235579)
chr6 (490-532)||(12696324-12696366)
chr6 (465-548)||(14155238-14155323)
chr6 (490-576)||(30851602-30851688)
chr6 (497-547)||(34290079-34290129)
chr6 (474-552)||(403859-403938)
chr6 (491-532)||(1532241-1532282)
chr6 (490-552)||(7377979-7378043)
chr6 (490-552)||(13364700-13364764)
chr6 (490-564)||(17841572-17841648)
chr6 (490-552)||(21924930-21924994)
chr6 (462-532)||(34073364-34073442)
chr6 (484-532)||(5462680-5462728)
chr6 (536-564)||(16766756-16766784)
chr6 (488-532)||(32511683-32511727)
[»] chr1 (47 HSPs)
chr1 (459-564)||(18190091-18190198)
chr1 (478-563)||(40181859-40181946)
chr1 (471-564)||(18337311-18337405)
chr1 (491-552)||(25452145-25452206)
chr1 (490-552)||(41877465-41877529)
chr1 (443-532)||(398782-398881)
chr1 (460-557)||(22881606-22881707)
chr1 (444-557)||(38078651-38078771)
chr1 (498-552)||(2288164-2288218)
chr1 (490-564)||(26238088-26238171)
chr1 (502-556)||(23636040-23636096)
chr1 (490-552)||(36878461-36878525)
chr1 (472-551)||(38075966-38076049)
chr1 (498-560)||(39130754-39130818)
chr1 (490-564)||(46348366-46348442)
chr1 (437-495)||(48548024-48548084)
chr1 (497-552)||(14248837-14248890)
chr1 (490-547)||(20157350-20157409)
chr1 (441-547)||(6612171-6612289)
chr1 (440-529)||(10474997-10475090)
chr1 (442-535)||(17831545-17831642)
chr1 (496-535)||(21038089-21038128)
chr1 (483-547)||(34371707-34371772)
chr1 (490-554)||(39953139-39953205)
chr1 (497-564)||(51410031-51410101)
chr1 (488-547)||(1486709-1486770)
chr1 (485-552)||(1864875-1864944)
chr1 (444-495)||(10577797-10577850)
chr1 (490-532)||(12443477-12443519)
chr1 (485-531)||(17754306-17754352)
chr1 (490-557)||(22515877-22515946)
chr1 (463-547)||(24577186-24577274)
chr1 (497-564)||(37598839-37598907)
chr1 (481-564)||(40258916-40259001)
chr1 (485-535)||(42004961-42005011)
chr1 (466-532)||(3490407-3490475)
chr1 (471-532)||(25361867-25361928)
chr1 (491-532)||(31015044-31015085)
chr1 (490-530)||(2896140-2896180)
chr1 (490-563)||(5898250-5898325)
chr1 (463-495)||(5927402-5927434)
chr1 (491-552)||(9709821-9709884)
chr1 (459-532)||(25098572-25098647)
chr1 (496-532)||(37055873-37055909)
chr1 (491-535)||(40285668-40285712)
chr1 (484-532)||(40747790-40747838)
chr1 (463-495)||(48040524-48040556)
[»] chr7 (30 HSPs)
chr7 (444-564)||(9778452-9778581)
chr7 (496-564)||(21880158-21880228)
chr7 (485-564)||(20549786-20549867)
chr7 (463-547)||(27945006-27945100)
chr7 (462-531)||(10230091-10230160)
chr7 (490-552)||(28155570-28155634)
chr7 (470-537)||(2424595-2424661)
chr7 (498-554)||(4909159-4909217)
chr7 (490-545)||(29787373-29787428)
chr7 (471-545)||(11700784-11700858)
chr7 (490-564)||(24105678-24105754)
chr7 (490-547)||(30731037-30731094)
chr7 (484-532)||(8160410-8160458)
chr7 (488-549)||(21568620-21568683)
chr7 (496-532)||(30813818-30813854)
chr7 (461-532)||(13300381-13300452)
chr7 (481-532)||(26033478-26033529)
chr7 (481-552)||(19213794-19213867)
chr7 (490-532)||(32308120-32308162)
chr7 (465-527)||(40131991-40132052)
chr7 (517-554)||(3652303-3652340)
chr7 (496-541)||(12289120-12289165)
chr7 (490-564)||(22484025-22484101)
chr7 (490-535)||(23930219-23930264)
chr7 (490-552)||(25481902-25481966)
chr7 (490-552)||(26733304-26733368)
chr7 (490-547)||(19992001-19992060)
chr7 (490-547)||(24339642-24339701)
chr7 (471-535)||(29812678-29812742)
chr7 (474-514)||(41414870-41414910)
[»] chr5 (33 HSPs)
chr5 (460-532)||(6471906-6471978)
chr5 (459-564)||(21191039-21191154)
chr5 (443-532)||(6326314-6326413)
chr5 (485-563)||(6770538-6770616)
chr5 (485-564)||(42893355-42893436)
chr5 (498-552)||(2548395-2548451)
chr5 (484-540)||(2419851-2419907)
chr5 (491-564)||(30502371-30502446)
chr5 (491-564)||(30542714-30542789)
chr5 (490-562)||(27932235-27932309)
chr5 (461-532)||(32766960-32767031)
chr5 (464-552)||(6247588-6247686)
chr5 (498-552)||(11596452-11596506)
chr5 (491-562)||(21576730-21576803)
chr5 (498-557)||(28588664-28588725)
chr5 (490-551)||(16203791-16203854)
chr5 (484-524)||(19746717-19746757)
chr5 (443-495)||(15382420-15382474)
chr5 (443-495)||(21522693-21522747)
chr5 (443-495)||(21533259-21533313)
chr5 (488-564)||(32630718-32630796)
chr5 (491-547)||(36838544-36838602)
chr5 (490-532)||(43001800-43001842)
chr5 (490-564)||(18421824-18421900)
chr5 (498-535)||(31264446-31264483)
chr5 (476-532)||(2236802-2236857)
chr5 (490-547)||(3966503-3966562)
chr5 (459-495)||(13287461-13287497)
chr5 (463-495)||(22013379-22013411)
chr5 (484-532)||(24273047-24273095)
chr5 (484-532)||(24389119-24389167)
chr5 (488-532)||(39698539-39698583)
chr5 (484-532)||(41091274-41091322)
[»] chr2 (31 HSPs)
chr2 (445-547)||(44860273-44860379)
chr2 (463-564)||(38117142-38117247)
chr2 (498-552)||(30298444-30298498)
chr2 (461-535)||(12748653-12748729)
chr2 (498-564)||(15972881-15972949)
chr2 (490-547)||(21782820-21782877)
chr2 (462-531)||(24975343-24975411)
chr2 (488-564)||(2438702-2438780)
chr2 (460-561)||(18276483-18276594)
chr2 (498-547)||(2331802-2331851)
chr2 (508-562)||(20242712-20242768)
chr2 (490-564)||(30404833-30404909)
chr2 (482-546)||(1327970-1328034)
chr2 (461-513)||(18631443-18631495)
chr2 (462-546)||(18889592-18889679)
chr2 (459-544)||(28412311-28412404)
chr2 (485-546)||(42832277-42832340)
chr2 (497-557)||(5367199-5367261)
chr2 (488-564)||(18840996-18841074)
chr2 (444-532)||(21374716-21374809)
chr2 (471-535)||(29970563-29970629)
chr2 (490-532)||(21616762-21616804)
chr2 (498-532)||(23921261-23921295)
chr2 (490-532)||(39323264-39323306)
chr2 (459-501)||(40068417-40068459)
chr2 (498-535)||(10535773-10535810)
chr2 (488-550)||(22085002-22085066)
chr2 (498-552)||(34006986-34007042)
chr2 (490-564)||(37411227-37411303)
chr2 (484-532)||(31456658-31456706)
chr2 (490-546)||(36409630-36409686)
[»] chr4 (32 HSPs)
chr4 (441-564)||(23292969-23293104)
chr4 (481-570)||(54580000-54580091)
chr4 (444-564)||(4157102-4157225)
chr4 (460-543)||(21873377-21873460)
chr4 (460-543)||(21929238-21929321)
chr4 (481-564)||(29205435-29205520)
chr4 (497-554)||(17425384-17425441)
chr4 (463-564)||(9996813-9996916)
chr4 (441-532)||(37203219-37203306)
chr4 (444-495)||(20633429-20633482)
chr4 (490-532)||(24343507-24343549)
chr4 (490-552)||(8423713-8423777)
chr4 (490-535)||(20743292-20743337)
chr4 (490-564)||(21945503-21945579)
chr4 (490-535)||(43299985-43300030)
chr4 (490-535)||(43300616-43300661)
chr4 (490-563)||(49431025-49431101)
chr4 (490-547)||(56257933-56257990)
chr4 (485-562)||(2361960-2362039)
chr4 (490-561)||(4672071-4672144)
chr4 (490-564)||(16886609-16886683)
chr4 (490-532)||(32910551-32910593)
chr4 (491-553)||(16189710-16189774)
chr4 (483-557)||(28964238-28964314)
chr4 (498-535)||(31243562-31243599)
chr4 (534-563)||(55867611-55867640)
chr4 (460-551)||(56049845-56049939)
chr4 (483-535)||(18513255-18513307)
chr4 (489-541)||(34589714-34589766)
chr4 (459-495)||(35158047-35158083)
chr4 (499-535)||(46180950-46180986)
chr4 (484-532)||(51701252-51701300)
[»] chr8 (31 HSPs)
chr8 (460-547)||(25566811-25566900)
chr8 (496-562)||(37283797-37283863)
chr8 (463-563)||(40332170-40332266)
chr8 (461-564)||(926771-926884)
chr8 (496-562)||(3025557-3025625)
chr8 (459-547)||(8342941-8343031)
chr8 (497-564)||(20679378-20679447)
chr8 (490-553)||(34897085-34897150)
chr8 (490-552)||(13844591-13844655)
chr8 (497-566)||(14134706-14134777)
chr8 (463-565)||(22595965-22596071)
chr8 (467-535)||(40063928-40063996)
chr8 (485-532)||(4611529-4611576)
chr8 (497-532)||(7658470-7658505)
chr8 (497-532)||(13203648-13203683)
chr8 (444-512)||(16642011-16642081)
chr8 (497-552)||(4948659-4948716)
chr8 (498-553)||(12985400-12985457)
chr8 (488-547)||(24669431-24669492)
chr8 (498-535)||(14513188-14513225)
chr8 (444-514)||(18069166-18069238)
chr8 (498-564)||(20873077-20873145)
chr8 (490-552)||(31236572-31236636)
chr8 (499-547)||(9382981-9383029)
chr8 (484-532)||(14731706-14731754)
chr8 (489-529)||(18067954-18067994)
chr8 (459-495)||(22651937-22651973)
chr8 (444-493)||(24413624-24413675)
chr8 (463-495)||(25192409-25192441)
chr8 (442-495)||(29510366-29510421)
chr8 (482-533)||(30068044-30068096)
[»] scaffold0053 (1 HSPs)
scaffold0053 (441-564)||(8739-8874)
[»] scaffold0050 (1 HSPs)
scaffold0050 (498-564)||(70286-70354)
[»] scaffold0004 (1 HSPs)
scaffold0004 (490-532)||(92807-92849)
[»] scaffold0652 (1 HSPs)
scaffold0652 (490-564)||(445-521)
[»] scaffold0376 (1 HSPs)
scaffold0376 (481-547)||(6303-6371)
[»] scaffold0722 (1 HSPs)
scaffold0722 (490-559)||(7020-7091)
[»] scaffold0049 (1 HSPs)
scaffold0049 (491-552)||(63774-63837)
[»] scaffold0116 (1 HSPs)
scaffold0116 (439-495)||(9837-9895)
[»] scaffold0007 (1 HSPs)
scaffold0007 (460-495)||(225330-225365)
[»] scaffold1528 (1 HSPs)
scaffold1528 (485-531)||(1030-1076)
[»] scaffold0227 (1 HSPs)
scaffold0227 (459-496)||(15016-15053)
[»] scaffold0123 (1 HSPs)
scaffold0123 (466-532)||(44542-44610)
[»] scaffold0022 (1 HSPs)
scaffold0022 (498-564)||(90851-90919)
[»] scaffold0020 (1 HSPs)
scaffold0020 (485-547)||(135312-135376)
[»] scaffold0003 (1 HSPs)
scaffold0003 (462-495)||(241558-241591)
[»] scaffold0083 (1 HSPs)
scaffold0083 (517-562)||(45515-45562)
[»] scaffold0019 (1 HSPs)
scaffold0019 (536-564)||(71784-71812)


Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 29 - 557
Target Start/End: Original strand, 3618421 - 3618948
Alignment:
Q  29 ttttaggaaaggtgatattagctaagaacaaatttggacagagattttctaatcaaaagcatggcatttagatttctgaagtaacaagtaaagaatgatt 128  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3618421 ttttaggaaaggtgatagtagctaagaacaaatttgaacagagattttctaatcaaaagcatggcatttagatttctgaagtaacaagtaaagcatgatt 3618520  T
Q  129 tgaaagttgtatagctcaacttacggtcaagaaaacaattgccaccggaacaagaaggacatgctattttggaaagaacagatcatagtttgatggaaaa 228  Q
    ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  3618521 tgaaagttgtatagctcaacttatggtcaagaaaacaattgccactagaacaagaacgacgtgctattttggaaagaacagatcatagtttgatggaaaa 3618620  T
Q  229 ctggttttgaactcataagaacaagtttcaatctacagtttctatgattaagccttgtgcatgcattatcttt-catagaaacaaatagtgcatatgatt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3618621 ctggttttgaactcataagaacaagtttcaatctacagtttctatgattaagccttgtgcatgcattatctttccatagaaacaaatagtgcatatgatt 3618720  T
Q  328 ctgaaatgcattagccaaacttttgcaaaaaatattgtctggtttcatgaatgtaaacagcatgttcaaccagtgtcctcaatcaagcatcactaaaaat 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3618721 ctgaaatgcattagccaaacttttgcaaaaaatattgtctggtttcatgaatgtaaacagcatgttcaaccagtgtcgtcaatcaagcatcactaaaaat 3618820  T
Q  428 ggtagttttttaaaacctatgaagcacggaaggacacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagt 527  Q
    |||||||| ||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||     
T  3618821 ggtagtttgttaaaacctatgaagcacggaaggacac--acaccggacacaatacggacactgacaccgctaataatttgagaaaattccataattcagc 3618918  T
Q  528 gtaatcatgtgtcggtgtcggacacaacac 557  Q
    ||||| ||||||||||||| ||||||||||    
T  3618919 gtaattatgtgtcggtgtcagacacaacac 3618948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 462 - 564
Target Start/End: Original strand, 11251950 - 11252052
Alignment:
Q  462 cacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcggacacaacacgtgt 561  Q
    |||||||||  | ||||| | |||||||||||  |||||||||||||||||||  |||||||||||||||| ||||||||||||| ||||||||||||||    
T  11251950 cacggacactagtcacgacatggacactgacattgctaataatttgagaaaatcacataattcagtgtaattatgtgtcggtgtcagacacaacacgtgt 11252049  T
Q  562 ccg 564  Q
    |||    
T  11252050 ccg 11252052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 553
Target Start/End: Complemental strand, 51206421 - 51206347
Alignment:
Q  481 acggacactgacacggctaataatttgagaaaattccataattcagtgtaa--tcatgtgtcggtgtcggacaca 553  Q
    |||||||||||||| ||||||||||||| |||||  |||||||||||||||   || ||||||||||||||||||    
T  51206421 acggacactgacacagctaataatttgaaaaaatcacataattcagtgtaaatacaagtgtcggtgtcggacaca 51206347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 497 - 564
Target Start/End: Original strand, 10954959 - 10955028
Alignment:
Q  497 ctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||||||||||| |||||  ||||||||||||||||  || ||||||||||||||||| |||||||||||    
T  10954959 ctaataatttgaaaaaatcacataattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgtccg 10955028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 444 - 547
Target Start/End: Original strand, 14027959 - 14028066
Alignment:
Q  444 ctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgt 539  Q
    ||||||||||||||   ||||||||||||||||||||| |||||||| ||||| ||||||  ||| |||||||  || ||| |||||||||   ||||||    
T  14027959 ctatgaagcacggatacggacacggacaccggacacgacacggacaccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgt 14028058  T
Q  540 cggtgtcg 547  Q
    ||||||||    
T  14028059 cggtgtcg 14028066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 557
Target Start/End: Complemental strand, 8789638 - 8789540
Alignment:
Q  463 acggacaccggacacgatacggacact--gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacac 557  Q
    ||||||||||||||| | || |||||   ||||||||| |||||||||||||||  |||||||| |||||||   ||||||||||||||||||| ||||    
T  8789638 acggacaccggacacaacacagacacaccgacacggcttataatttgagaaaatcacataattccgtgtaattatatgtgtcggtgtcggacacgacac 8789540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 552
Target Start/End: Original strand, 7928444 - 7928514
Alignment:
Q  484 gacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacac 552  Q
    ||||| ||||| ||||||||||||| |||||  ||||||||||||||||   |||||||||||||||||||    
T  7928444 gacaccgacaccgctaataatttgaaaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 7928514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 459 - 552
Target Start/End: Original strand, 8383218 - 8383321
Alignment:
Q  459 ggacacggacaccggacacgatacggacactgacacg--------gctaataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcgg 548  Q
    |||||||||||| |||||||| ||||||| |||||||        |||||||||||||||||||   ||||||||||||||| ||  |||||||||||||    
T  8383218 ggacacggacactggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatcatataattcagtgtaattataagtgtcggtgtcgg 8383317  T
Q  549 acac 552  Q
    ||||    
T  8383318 acac 8383321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 444 - 532
Target Start/End: Complemental strand, 11313907 - 11313817
Alignment:
Q  444 ctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||||||||   ||||||| |||| ||| |||| || ||||| ||||| |||||||||||||||||||  ||||||| ||||||||    
T  11313907 ctatgaagcacggatacggacacgaacacgggagacgaaacagacaccgacactgctaataatttgagaaaatcacataatttagtgtaat 11313817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 462 - 564
Target Start/End: Original strand, 28917965 - 28918079
Alignment:
Q  462 cacggacaccggacacgatacggacactgacacg--------gctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtc--gga 549  Q
    |||||||||||||||||| ||||| |||||||||        ||||||||||||| |||||  ||||||||||||||||  || |||||||||||  |||    
T  28917965 cacggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgga 28918064  T
Q  550 cacaacacgtgtccg 564  Q
    ||| |||||||||||    
T  28918065 cacgacacgtgtccg 28918079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 553
Target Start/End: Original strand, 20691327 - 20691384
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatc--atgtgtcggtgtcggacaca 553  Q
    |||||||||||||||||  |||||||||||||||||  ||||||||||||| ||||||    
T  20691327 taataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacaca 20691384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 564
Target Start/End: Original strand, 45451544 - 45451629
Alignment:
Q  481 acggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||||||  |||| |||||||||||||||||||  |||| |||||| ||||   ||||||||||||||||||| |||| ||||||    
T  45451544 acggacacgaacactgctaataatttgagaaaatcacatacttcagtataataatatgtgtcggtgtcggacacgacacatgtccg 45451629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 564
Target Start/End: Original strand, 55401082 - 55401151
Alignment:
Q  497 ctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||||||||||| |||||  ||||||| ||||||||  || ||||||||||||||||| |||||||||||    
T  55401082 ctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccg 55401151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 564
Target Start/End: Original strand, 25093510 - 25093578
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||| ||||||||||||  || ||||||||||||| ||  |||||||||||||||||||||| ||||||    
T  25093510 taatgatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccg 25093578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 543
Target Start/End: Complemental strand, 27277897 - 27277844
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatcatgtgtcggt 543  Q
    ||||| |||||||||||||||||||  ||||||| |||||||| ||||||||||    
T  27277897 gacactgctaataatttgagaaaatcacataatttagtgtaattatgtgtcggt 27277844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 532
Target Start/End: Original strand, 21479085 - 21479160
Alignment:
Q  459 ggacacggacaccggacacgatacggacact--gacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||||||||||||||| || |||||   ||||| ||||||||||||| |||||  || |||||||||||||    
T  21479085 ggacacggacaccggacacgacactgacacgccgacacagctaataatttgaaaaaatcacacaattcagtgtaat 21479160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 564
Target Start/End: Complemental strand, 40993416 - 40993318
Alignment:
Q  471 cggacacgatacggacact--gacacggctaataatttgagaaaattc-cataattcagtgtaatcat--gtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||||||| ||||||||   ||||| ||||||||||| | |||| || |||||||||||||||| ||  ||||||||||||||||| |||| ||||||    
T  40993416 cggacacgacacggacacctcgacaccgctaataatttaaaaaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccg 40993318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 497
Target Start/End: Complemental strand, 750736 - 750678
Alignment:
Q  442 acctatgaagcacggaa--ggacacggacaccggacacgatacggacac-tgacacggc 497  Q
    ||||||||||||||||   ||||||||||||||||||||| |||||||| |||||||||    
T  750736 acctatgaagcacggatacggacacggacaccggacacgacacggacacttgacacggc 750678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 547
Target Start/End: Original strand, 1509532 - 1509598
Alignment:
Q  483 ggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    |||||||||||| ||||||||||||| |||||  ||||||| ||||||||  || ||||||||||||    
T  1509532 ggacactgacacagctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcg 1509598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 547
Target Start/End: Complemental strand, 8039893 - 8039835
Alignment:
Q  491 acacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    |||| ||||||||||||||||||||  |||||||||||||||   ||||||||||||||    
T  8039893 acaccgctaataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcg 8039835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 495
Target Start/End: Complemental strand, 24205138 - 24205103
Alignment:
Q  460 gacacggacaccggacacgatacggacactgacacg 495  Q
    |||||||||||||||||||| |||||||||||||||    
T  24205138 gacacggacaccggacacgacacggacactgacacg 24205103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 4991026 - 4990984
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||    
T  4991026 gacaccgctaatagtttgagaaaattacataattcagtgtaat 4990984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 563
Target Start/End: Complemental strand, 6780476 - 6780403
Alignment:
Q  492 cacggctaataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcggacacaacacgtgtcc 563  Q
    ||||| ||| |||||||||||||  | || ||||||||||| ||  |||| |||||||||||||||||||||||    
T  6780476 cacggataaaaatttgagaaaatcacgtagttcagtgtaattatatgtgttggtgtcggacacaacacgtgtcc 6780403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 10335382 - 10335348
Alignment:
Q  461 acacggacaccggacacgatacggacactgacacg 495  Q
    ||||||||||||||||||| |||||||||||||||    
T  10335382 acacggacaccggacacgacacggacactgacacg 10335348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 495
Target Start/End: Complemental strand, 15796409 - 15796356
Alignment:
Q  444 ctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacg 495  Q
    ||||||||||||||   ||||||||||||||||||||| ||||||| |||||||    
T  15796409 ctatgaagcacggatatggacacggacaccggacacgacacggacaatgacacg 15796356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 532
Target Start/End: Original strand, 21211289 - 21211330
Alignment:
Q  491 acacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    |||||| |||||||||||||||||| |||| |||||||||||    
T  21211289 acacggataataatttgagaaaattacatagttcagtgtaat 21211330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 535
Target Start/End: Original strand, 52369783 - 52369820
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcat 535  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  52369783 taataatttgagaaaattacataattcaatgtaatcat 52369820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 21149075 - 21149111
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatca 534  Q
    |||||||||||||||||  ||||||||||||||||||    
T  21149075 taataatttgagaaaatgacataattcagtgtaatca 21149111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 532
Target Start/End: Original strand, 26508108 - 26508152
Alignment:
Q  488 ctgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||| ||||||||||||| |||||  ||||||||||||||||    
T  26508108 ctgacacagctaataatttgaaaaaatcacataattcagtgtaat 26508152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 532
Target Start/End: Complemental strand, 34307841 - 34307797
Alignment:
Q  488 ctgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||| |||||||||||||||||||  |||| |||||||||||    
T  34307841 ctgacaccgctaataatttgagaaaatcacatatttcagtgtaat 34307797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 49651845 - 49651786
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    ||||||||||||||||||| |||||  ||||||||| ||||||  || ||||||||||||    
T  49651845 gacacggctaataatttgaaaaaatcacataattcactgtaattacaagtgtcggtgtcg 49651786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 459 - 561
Target Start/End: Original strand, 28715264 - 28715368
Alignment:
Q  459 ggacacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaaca 556  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||  || ||||||||||||||||| |||    
T  28715264 ggacacggacaccggacacgatacggacactgacacggctaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacacgaca 28715363  T
Q  557 cgtgt 561  Q
    |||||    
T  28715364 cgtgt 28715368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 444 - 541
Target Start/End: Complemental strand, 34225916 - 34225817
Alignment:
Q  444 ctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaatcatgtgtcg 541  Q
    ||||||||||||||   |||||||||||| |||||||||| ||||||||||||  |||||||||||| |||||  |||||||||||||||| ||||||||    
T  34225916 ctatgaagcacggatacggacacggacactggacacgataaggacactgacacaactaataatttgaaaaaatcgcataattcagtgtaattatgtgtcg 34225817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 498 - 563
Target Start/End: Complemental strand, 31579276 - 31579211
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcggacacaacacgtgtcc 563  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||| |||| |||||    
T  31579276 taataatttgagaaaatcacataattcagtgtaattatgtgtcggtgtcggacacgacacatgtcc 31579211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 465 - 532
Target Start/End: Original strand, 33817924 - 33817991
Alignment:
Q  465 ggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||||||||  ||| |||||||||| |||||||||| ||||||||| ||||||||||||||||    
T  33817924 ggacaccggacacggcacgaacactgacaccgctaataattggagaaaatttcataattcagtgtaat 33817991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 7977889 - 7977821
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaaca 556  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||  || |||||||||||||||||||||    
T  7977889 gacacagctaataatttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcggacacaaca 7977821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 491 - 564
Target Start/End: Complemental strand, 7265651 - 7265576
Alignment:
Q  491 acacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||| |||||||||||||||||||  ||||||||||||||||   ||||||||||||||||||||| || ||||||    
T  7265651 acaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacaatacatgtccg 7265576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 462 - 562
Target Start/End: Original strand, 34595098 - 34595208
Alignment:
Q  462 cacggacaccggacacgatacggacactgacacggc--------taataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggaca 551  Q
    |||||||||||||||||| ||||||| ||||||| |        ||||||||||| |||||  ||||||||||||||||  || ||||||||||||||||    
T  34595098 cacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggaca 34595197  T
Q  552 caacacgtgtc 562  Q
    | |||||||||    
T  34595198 cgacacgtgtc 34595208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 496 - 564
Target Start/End: Original strand, 28152105 - 28152174
Alignment:
Q  496 gctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||||||||||| |||||  ||||||||||||||||  || ||||||||||||||||| |||||||||||    
T  28152105 gctaataatttga-aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccg 28152174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 498 - 545
Target Start/End: Original strand, 29049893 - 29049940
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcatgtgtcggtgt 545  Q
    |||||||||||||||||| ||||||||| ||||||||||||| |||||    
T  29049893 taataatttgagaaaattacataattcaatgtaatcatgtgttggtgt 29049940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 488 - 535
Target Start/End: Original strand, 34446563 - 34446610
Alignment:
Q  488 ctgacacggctaataatttgagaaaattccataattcagtgtaatcat 535  Q
    ||||||||| |||||||||||||||||  |||||||||||||||||||    
T  34446563 ctgacacggataataatttgagaaaatgacataattcagtgtaatcat 34446610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 532
Target Start/End: Complemental strand, 7569251 - 7569185
Alignment:
Q  466 gacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||| |||| | ||||||  |||| | |||||||||||||||||| ||||||||||||||||    
T  7569251 gacaccggatacgacatggacaccaacacagataataatttgagaaaattacataattcagtgtaat 7569185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 547
Target Start/End: Original strand, 16766658 - 16766756
Alignment:
Q  459 ggacacggacaccggacacgatacggacactgacacg--------gctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    ||||||||||||||||||||| | |||||||||||||        ||||||||||||| |||||  ||||||||||||||||  || ||||||||||||    
T  16766658 ggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 16766756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 557
Target Start/End: Original strand, 19040352 - 19040421
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacac 557  Q
    ||||| |||||||||||||||||||  ||||||||||||||||   ||||||| ||||||||||| ||||    
T  19040352 gacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtctgtgtcggacacgacac 19040421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 441 - 495
Target Start/End: Original strand, 7938057 - 7938113
Alignment:
Q  441 aacctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacg 495  Q
    |||||||||||||||||   ||||||||||||||||||||| | |||||||||||||    
T  7938057 aacctatgaagcacggatacggacacggacaccggacacgacatggacactgacacg 7938113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 545
Target Start/End: Complemental strand, 8805625 - 8805576
Alignment:
Q  496 gctaataatttgagaaaattccataattcagtgtaatcatgtgtcggtgt 545  Q
    |||||||||||||||||||  ||||||| |||||||| ||||||||||||    
T  8805625 gctaataatttgagaaaatcacataatttagtgtaattatgtgtcggtgt 8805576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 481 - 547
Target Start/End: Complemental strand, 9025562 - 9025494
Alignment:
Q  481 acggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    |||||||  ||||| |||||||||||||||||||  ||||||||||||||||   ||||||||||||||    
T  9025562 acggacatggacactgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 9025494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 439 - 547
Target Start/End: Complemental strand, 9107490 - 9107370
Alignment:
Q  439 aaaacctatgaagcacggaag--gacacggacaccggacacgatacggacact--------gacacggctaataatttgagaaaattccataattcagtg 528  Q
    |||||||||||||||||||    |||||||||||||||||||| |||||||||        ||||| ||||||||||||| |||||  || |||||||||    
T  9107490 aaaacctatgaagcacggatactgacacggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtg 9107391  T
Q  529 taat--catgtgtcggtgtcg 547  Q
    ||||  || ||||||||||||    
T  9107390 taattacaagtgtcggtgtcg 9107370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 466 - 535
Target Start/End: Complemental strand, 30781377 - 30781308
Alignment:
Q  466 gacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaatcat 535  Q
    |||||| ||||||| ||| |||||||||||  |||||||||||||||||  ||||||| | |||||||||    
T  30781377 gacaccagacacgacacgaacactgacacgtgtaataatttgagaaaatgacataattaattgtaatcat 30781308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 532
Target Start/End: Complemental strand, 5970200 - 5970125
Alignment:
Q  459 ggacacggacaccggacacgatacggacact--gacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    |||||||||||||||||| || ||||||||   ||||| | ||||||||||| |||||  ||||||||||||||||    
T  5970200 ggacacggacaccggacatgacacggacacgtcgacacagttaataatttgaaaaaatcacataattcagtgtaat 5970125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 552
Target Start/End: Complemental strand, 6898342 - 6898276
Alignment:
Q  488 ctgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacac 552  Q
    |||||||| ||||||||||||  ||||| ||||||| ||||||||  || |||||||||||||||||    
T  6898342 ctgacacgtctaataatttgaacaaattacataattaagtgtaattacaagtgtcggtgtcggacac 6898276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 558
Target Start/End: Complemental strand, 8777088 - 8776962
Alignment:
Q  444 ctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacg--------gctaataatttgagaaaattccataattcagtgtaat- 532  Q
    ||||||||||||||   ||||||||||| ||||||||| |||||||||||||||         |||||||||||| |||||  || |||||||||||||     
T  8777088 ctatgaagcacggatacggacacggacaacggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatcacaaaattcagtgtaatt 8776989  T
Q  533 -catgtgtcggtgtcggacacaacacg 558  Q
     || |||| |||||||||||| |||||    
T  8776988 acaagtgttggtgtcggacacgacacg 8776962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 20576697 - 20576650
Alignment:
Q  485 acactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    |||| ||| |||||||||||| ||||||||| ||||||||||||||||    
T  20576697 acaccgacgcggctaataattcgagaaaattgcataattcagtgtaat 20576650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 562
Target Start/End: Complemental strand, 33001348 - 33001274
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcggacacaacacgtgtc 562  Q
    ||||| ||||||||||||| |||||  ||||||| | |||||| ||  ||||||||||||||||| |||||||||    
T  33001348 gacactgctaataatttgaaaaaatcacataattaaatgtaattatatgtgtcggtgtcggacacgacacgtgtc 33001274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 547
Target Start/End: Original strand, 9027139 - 9027237
Alignment:
Q  459 ggacacggacaccggacacgatacggacactgacacg--------gctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    |||||||||| |||||||||| |||||||||||||||        ||||||||||||||| |||  |||||||| |||||||   ||||||||||||||    
T  9027139 ggacacggactccggacacgacacggacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaattatatgtgtcggtgtcg 9027237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 535
Target Start/End: Complemental strand, 12235579 - 12235533
Alignment:
Q  489 tgacacggctaataatttgagaaaattccataattcagtgtaatcat 535  Q
    |||||||| |||||||| ||||||||  |||||||||||||||||||    
T  12235579 tgacacggataataattagagaaaatgacataattcagtgtaatcat 12235533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 12696324 - 12696366
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||    
T  12696324 gacacagctaataatttgaaaaaattacataattcagtgtaat 12696366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 548
Target Start/End: Complemental strand, 14155323 - 14155238
Alignment:
Q  465 ggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcgg 548  Q
    ||||||| ||||||| || ||||||||||| | | |||||||||||||||  |||||| |||||| ||  ||||||| ||||||||    
T  14155323 ggacaccagacacgacacagacactgacaccgatcataatttgagaaaatcacataatacagtgtgattacatgtgttggtgtcgg 14155238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 576
Target Start/End: Original strand, 30851602 - 30851688
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcggacacaacacgtgtccgtccttcgtagtg 576  Q
    ||||| ||||||||||| |||||||  || |||||| |||||| ||  ||||||||||||||||| ||||||||| || |||| |||||    
T  30851602 gacactgctaataatttaagaaaat--cacaattcaatgtaattatatgtgtcggtgtcggacacgacacgtgtctgtgcttcatagtg 30851688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 547
Target Start/End: Complemental strand, 34290129 - 34290079
Alignment:
Q  497 ctaataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcg 547  Q
    ||||||||||| || |||  |||||||||||||||| ||||||||||||||    
T  34290129 ctaataatttgcgagaatcacataattcagtgtaattatgtgtcggtgtcg 34290079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 552
Target Start/End: Complemental strand, 403938 - 403859
Alignment:
Q  474 acacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaa--tcatgtgtcggtgtcggacac 552  Q
    |||||||||||||| |||||| | ||||||||||| |||||  ||||||| |||||||   || |||||||||||||||||    
T  403938 acacgatacggacattgacacag-taataatttgaaaaaatcacataatttagtgtaactacaagtgtcggtgtcggacac 403859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 532
Target Start/End: Original strand, 1532241 - 1532282
Alignment:
Q  491 acacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    |||| ||||||||||||| |||||| ||||||||||||||||    
T  1532241 acaccgctaataatttgataaaattacataattcagtgtaat 1532282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 552
Target Start/End: Original strand, 7377979 - 7378043
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacac 552  Q
    ||||| ||||| |||||||||||||  ||||||||| ||||||   |||||||||||||||||||    
T  7377979 gacaccgctaaaaatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcggacac 7378043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 552
Target Start/End: Complemental strand, 13364764 - 13364700
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatc--atgtgtcggtgtcggacac 552  Q
    ||||| ||| |||||||||||||||   ||||||||||||||||  |||||||||||| ||||||    
T  13364764 gacactgcttataatttgagaaaatcatataattcagtgtaatcatatgtgtcggtgttggacac 13364700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 564
Target Start/End: Complemental strand, 17841648 - 17841572
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||| ||||||||||||| |||||  ||||||| ||||||||  || ||| ||||||||||||| ||| |||||||    
T  17841648 gacacagctaataatttgaaaaaatcacataatttagtgtaattacaagtgacggtgtcggacacgacatgtgtccg 17841572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 552
Target Start/End: Complemental strand, 21924994 - 21924930
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacac 552  Q
    ||||| |||||||||||||||| ||   |||||||||||||||   |||||||||||||||||||    
T  21924994 gacactgctaataatttgagaatatcaaataattcagtgtaattatatgtgtcggtgtcggacac 21924930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 532
Target Start/End: Complemental strand, 34073442 - 34073364
Alignment:
Q  462 cacggacaccggacacgatacggacactgacacg--------gctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||| |||||||| ||||||||||||| |        |||||||||||||||||||  ||||||||||||||||    
T  34073442 cacggacactggacacgacacggacactgacatgccaacatcgctaataatttgagaaaatctcataattcagtgtaat 34073364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 532
Target Start/End: Original strand, 5462680 - 5462728
Alignment:
Q  484 gacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||||| | |||||||||||||||||  ||||||||| ||||||    
T  5462680 gacactgacaccgttaataatttgagaaaatcacataattcattgtaat 5462728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 564
Target Start/End: Original strand, 16766756 - 16766784
Alignment:
Q  536 gtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||||||||||||||||||||||||||||    
T  16766756 gtgtcggtgtcggacacaacacgtgtccg 16766784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 532
Target Start/End: Complemental strand, 32511727 - 32511683
Alignment:
Q  488 ctgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||| ||||||||||| |||||||  ||||||||||||||||    
T  32511727 ctgacaccgctaataatttaagaaaatcacataattcagtgtaat 32511683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 459 - 564
Target Start/End: Complemental strand, 18190198 - 18190091
Alignment:
Q  459 ggacacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaaca 556  Q
    ||||| ||||||||||||||| ||||| ||||||||  |||||||||||| |||||| ||||||||||||||||  || |||||| |||| |||||||||    
T  18190198 ggacatggacaccggacacgacacggatactgacacacctaataatttgaaaaaattacataattcagtgtaattacaagtgtcgatgtcagacacaaca 18190099  T
Q  557 cgtgtccg 564  Q
    ||||||||    
T  18190098 cgtgtccg 18190091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 478 - 563
Target Start/End: Original strand, 40181859 - 40181946
Alignment:
Q  478 gatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtcc 563  Q
    ||||||||||| ||||| |||||||||||||||||||  ||||||||||||||||   |||| |||||||||||||||||||||||||    
T  40181859 gatacggacacagacactgctaataatttgagaaaatcacataattcagtgtaattatatgtatcggtgtcggacacaacacgtgtcc 40181946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 471 - 564
Target Start/End: Original strand, 18337311 - 18337405
Alignment:
Q  471 cggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||| |||| ||||||||||||| | | |||||||||| |||||  ||||||||||||||||  || |||||||||||||||||||||||||||||    
T  18337311 cggatacgacacggacactgacatgcc-aataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccg 18337405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 552
Target Start/End: Complemental strand, 25452206 - 25452145
Alignment:
Q  491 acacggctaataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcggacac 552  Q
    |||| |||||||||||||||||||  |||||||||||||||| ||||||||||||| |||||    
T  25452206 acactgctaataatttgagaaaatctcataattcagtgtaattatgtgtcggtgtcagacac 25452145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 490 - 552
Target Start/End: Complemental strand, 41877529 - 41877465
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacac 552  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||  || |||||||||||||||||    
T  41877529 gacaccgctaataatttgagaaaattacataatttagtgtaattacaagtgtcggtgtcggacac 41877465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 532
Target Start/End: Complemental strand, 398881 - 398782
Alignment:
Q  443 cctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacg--------gctaataatttgagaaaattccataattcagtgtaat 532  Q
    |||||||||||||||   |||| |||||||||||||||| |||||||||||||||        ||||||||||||| |||||  ||||||||||||||||    
T  398881 cctatgaagcacggatacggacgcggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaat 398782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 557
Target Start/End: Complemental strand, 22881707 - 22881606
Alignment:
Q  460 gacacggacaccggacacgatacggaca--ctgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaac 555  Q
    |||||||||||||||||||| || ||||  | |||||  |||||||||||| |||||  ||||||| ||||||||  || ||||||||||||||||| ||    
T  22881707 gacacggacaccggacacgacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgac 22881608  T
Q  556 ac 557  Q
    ||    
T  22881607 ac 22881606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 444 - 557
Target Start/End: Complemental strand, 38078771 - 38078651
Alignment:
Q  444 ctatgaagcacggaa--ggacacggacaccggacacgat-acggacact--gacacggctaataatttgagaaaattccataattcagtgtaat--catg 536  Q
    ||||||||||||||   |||||||||||||||||||||  || |||||   ||||| ||||||||||||| |||||  ||||||||| ||||||  || |    
T  38078771 ctatgaagcacggatacggacacggacaccggacacgaacactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaattacaag 38078672  T
Q  537 tgtcggtgtcggacacaacac 557  Q
    |||||||||||||||| ||||    
T  38078671 tgtcggtgtcggacacgacac 38078651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 552
Target Start/End: Complemental strand, 2288218 - 2288164
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcggacac 552  Q
    ||||||||| |||||||  ||||||||| |||||| |||||||||||||||||||    
T  2288218 taataatttaagaaaatcacataattcaatgtaattatgtgtcggtgtcggacac 2288164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 564
Target Start/End: Complemental strand, 26238171 - 26238088
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaa--------tca-tgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||| |||||||||||||||||||  |||||||||||||||        ||| ||||||||||||||||||||||||||||||    
T  26238171 gacaccgctaataatttgagaaaataacataattcagtgtaatatatgtgtcagtgtgtcggtgtcggacacaacacgtgtccg 26238088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 502 - 556
Target Start/End: Complemental strand, 23636096 - 23636040
Alignment:
Q  502 aatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaaca 556  Q
    |||||||||||||| ||||||||||||||||   ||||||||||||| |||||||||    
T  23636096 aatttgagaaaattacataattcagtgtaattgtatgtgtcggtgtcagacacaaca 23636040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 552
Target Start/End: Original strand, 36878461 - 36878525
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcggacac 552  Q
    ||||| |||||||||||||||||||  |||||||||||||||| ||  ||||||||||| |||||    
T  36878461 gacaccgctaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtctgacac 36878525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 472 - 551
Target Start/End: Complemental strand, 38076049 - 38075966
Alignment:
Q  472 ggacacgatacggacact--gacacggctaataatttgagaaaattccataattcagtgtaatc--atgtgtcggtgtcggaca 551  Q
    |||||||| ||||||||   ||||| |||||||||||||| ||||  ||||| |||||||||||  ||||||||||||||||||    
T  38076049 ggacacgacacggacacgacgacactgctaataatttgagtaaatcacataagtcagtgtaatcatatgtgtcggtgtcggaca 38075966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 560
Target Start/End: Complemental strand, 39130818 - 39130754
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcggacacaacacgtg 560  Q
    ||||||||| ||||||||  |||||| |||||||| ||  |||||||||||||||||||||||||    
T  39130818 taataattttagaaaattatataatttagtgtaattatatgtgtcggtgtcggacacaacacgtg 39130754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 564
Target Start/End: Complemental strand, 46348442 - 46348366
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||| ||||||||||||| |||||   |||||| ||||||||  || ||||||||||||||||| |||||||||||    
T  46348442 gacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccg 46348366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 437 - 495
Target Start/End: Complemental strand, 48548084 - 48548024
Alignment:
Q  437 ttaaaacctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacg 495  Q
    |||| ||||||||||||||||   ||||||||||||||||||| ||||||||| |||||||    
T  48548084 ttaatacctatgaagcacggatacggacacggacaccggacacaatacggacaatgacacg 48548024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 497 - 552
Target Start/End: Original strand, 14248837 - 14248890
Alignment:
Q  497 ctaataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcggacac 552  Q
    |||||||||||| |||||  |||||||||||||||| ||||||| |||||||||||    
T  14248837 ctaataatttgaaaaaat--cataattcagtgtaattatgtgtcagtgtcggacac 14248890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 20157409 - 20157350
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatc--atgtgtcggtgtcg 547  Q
    ||||| ||||||||| |||||||||  |||||||||||||||||  ||||||||||||||    
T  20157409 gacaccgctaataatgtgagaaaatcacataattcagtgtaatcatatgtgtcggtgtcg 20157350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 547
Target Start/End: Complemental strand, 6612289 - 6612171
Alignment:
Q  441 aacctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacggc--------taataatttgagaaaattccataattcagtgta 530  Q
    |||||||||||||| ||   ||||||| ||||||||||||| ||||||| ||||||| |        ||||||||||| |||||| ||||||||||||||    
T  6612289 aacctatgaagcacagatacggacacgaacaccggacacgacacggacaatgacacgccgatacagttaataatttgaaaaaattacataattcagtgta 6612190  T
Q  531 at--catgtgtcggtgtcg 547  Q
    ||  || ||||||||||||    
T  6612189 attacaagtgtcggtgtcg 6612171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 529
Target Start/End: Complemental strand, 10475090 - 10474997
Alignment:
Q  440 aaacctatgaagcacggaa--ggacacggacaccggacacgatacggacact--gacacggctaataatttgagaaaattccataattcagtgt 529  Q
    ||||||||||||||||||   | ||||||||||||||||||| |  |||||   ||||| |||||||| ||||||||||  |||||||||||||    
T  10475090 aaacctatgaagcacggatatgaacacggacaccggacacgacattgacacgccgacaccgctaataacttgagaaaatcacataattcagtgt 10474997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 535
Target Start/End: Complemental strand, 17831642 - 17831545
Alignment:
Q  442 acctatgaagcacggaag--gacacggacaccggacacgatacggacact--gacacggctaataatttgagaaaattccataattcagtgtaatcat 535  Q
    ||||||||||||||||    ||||| ||||||||| |||| || |||||   ||||| |||||||||||||||||||  ||| |||||||||||||||    
T  17831642 acctatgaagcacggatacagacacagacaccggatacgacactgacacgccgacaccgctaataatttgagaaaatcacattattcagtgtaatcat 17831545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 535
Target Start/End: Original strand, 21038089 - 21038128
Alignment:
Q  496 gctaataatttgagaaaattccataattcagtgtaatcat 535  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  21038089 gctaataatttaagaaaattacataattcagtgtaatcat 21038128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 547
Target Start/End: Original strand, 34371707 - 34371772
Alignment:
Q  483 ggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    |||||||||||| |||||||||| ||||||||  ||||||||||||||||   ||||||||||||||    
T  34371707 ggacactgacaccgctaataatt-gagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 34371772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 39953205 - 39953139
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaa 554  Q
    ||||| ||||||||||| |||||||  ||||||| ||||||||   |||||||||||||||||||||    
T  39953205 gacaccgctaataattttagaaaatcacataatttagtgtaattgtatgtgtcggtgtcggacacaa 39953139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 564
Target Start/End: Original strand, 51410031 - 51410101
Alignment:
Q  497 ctaataatttgagaaaattc-cataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||||||||||| |||| || ||||||||||||||||  || ||||||||||||||||| |||||| ||||    
T  51410031 ctaataatttgaaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtatccg 51410101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 547
Target Start/End: Complemental strand, 1486770 - 1486709
Alignment:
Q  488 ctgacacggctaataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcg 547  Q
    ||||||| ||||||||||||| |||||  |||||||||||||||| ||  ||||||||||||    
T  1486770 ctgacacagctaataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcg 1486709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 552
Target Start/End: Complemental strand, 1864944 - 1864875
Alignment:
Q  485 acactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacac 552  Q
    |||| ||||| | |||||||||||||||||  ||||||||||||||||   |||||||||||| ||||||    
T  1864944 acaccgacacagttaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgttggacac 1864875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 495
Target Start/End: Complemental strand, 10577850 - 10577797
Alignment:
Q  444 ctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacg 495  Q
    ||||||||||||||   ||||||||||||||||||||| |||||||| ||||||    
T  10577850 ctatgaagcacggatacggacacggacaccggacacgacacggacaccgacacg 10577797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 12443519 - 12443477
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||| |||||||||||||||||||  ||||||||||||||||    
T  12443519 gacacagctaataatttgagaaaatcacataattcagtgtaat 12443477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 531
Target Start/End: Original strand, 17754306 - 17754352
Alignment:
Q  485 acactgacacggctaataatttgagaaaattccataattcagtgtaa 531  Q
    |||| ||||| ||||||||||||| |||||| |||||||||||||||    
T  17754306 acaccgacaccgctaataatttgaaaaaattacataattcagtgtaa 17754352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 557
Target Start/End: Complemental strand, 22515946 - 22515877
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacac 557  Q
    ||||| ||||||||||||| |||||  ||||||| ||||||||  || ||||||||||||||||| ||||    
T  22515946 gacacagctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacac 22515877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 547
Target Start/End: Complemental strand, 24577274 - 24577186
Alignment:
Q  463 acggacaccggacacgatacggacac--tgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    |||||||| | |||||| ||||||||  ||||||  |||||||||||| |||||  ||||||||||||||||  || ||||||||||||    
T  24577274 acggacactgaacacgacacggacacgctgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 24577186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 564
Target Start/End: Original strand, 37598839 - 37598907
Alignment:
Q  497 ctaataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||||||||||| |||||  || ||||||||||||| ||  ||||||||||||||||| |||||||||||    
T  37598839 ctaataatttgaaaaaatcaca-aattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccg 37598907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 564
Target Start/End: Complemental strand, 40259001 - 40258916
Alignment:
Q  481 acggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||||||| |||||   ||||||||||| |||||  ||||||||||||||||  || ||||||||||| ||||| |||| ||||||    
T  40259001 acggacaccgacacaattaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccg 40258916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 535
Target Start/End: Complemental strand, 42005011 - 42004961
Alignment:
Q  485 acactgacacggctaataatttgagaaaattccataattcagtgtaatcat 535  Q
    |||| ||||||| |||||||||||||||||  ||||||| |||||||||||    
T  42005011 acacagacacggataataatttgagaaaatgacataatttagtgtaatcat 42004961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 532
Target Start/End: Complemental strand, 3490475 - 3490407
Alignment:
Q  466 gacaccggacacgatacggacact--gacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    |||||||||||||| || |||||   ||||| |||||||||||||||||| | ||| ||||||||||||    
T  3490475 gacaccggacacgacactgacacgccgacactgctaataatttgagaaaactacattattcagtgtaat 3490407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 532
Target Start/End: Original strand, 25361867 - 25361928
Alignment:
Q  471 cggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||| |||||| | |||||  || |||||||||||||||  ||||||||||||||||    
T  25361867 cggacacgacacggacgccgacaccactgataatttgagaaaatcacataattcagtgtaat 25361928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 532
Target Start/End: Original strand, 31015044 - 31015085
Alignment:
Q  491 acacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    |||| |||||||||||||||||||  ||||||||||||||||    
T  31015044 acacagctaataatttgagaaaatcacataattcagtgtaat 31015085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 530
Target Start/End: Complemental strand, 2896180 - 2896140
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgta 530  Q
    ||||| |||||||||||||||||||  ||||||||||||||    
T  2896180 gacaccgctaataatttgagaaaatcacataattcagtgta 2896140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 563
Target Start/End: Complemental strand, 5898325 - 5898250
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtcc 563  Q
    ||||| ||||||||| ||| |||||  ||||||||||||||||   ||| ||||||||| ||||| ||||||||||    
T  5898325 gacaccgctaataatctgaaaaaatcacataattcagtgtaattatatgcgtcggtgtcagacacgacacgtgtcc 5898250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 495
Target Start/End: Complemental strand, 5927434 - 5927402
Alignment:
Q  463 acggacaccggacacgatacggacactgacacg 495  Q
    ||||||||||||||||| |||||||||||||||    
T  5927434 acggacaccggacacgacacggacactgacacg 5927402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 552
Target Start/End: Original strand, 9709821 - 9709884
Alignment:
Q  491 acacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacac 552  Q
    |||| |||||||||||||||||||  ||||||||  ||||||   |||||||||||||||||||    
T  9709821 acaccgctaataatttgagaaaatcacataattcgttgtaattatatgtgtcggtgtcggacac 9709884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 532
Target Start/End: Complemental strand, 25098647 - 25098572
Alignment:
Q  459 ggacacggacaccggacacgatacggaca--ctgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||||| | ||||||| | |||||  | ||||| ||| |||||||||||||||  ||||||||||||||||    
T  25098647 ggacacggacaacagacacgacaaggacaagccgacaccgctgataatttgagaaaatcacataattcagtgtaat 25098572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 532
Target Start/End: Complemental strand, 37055909 - 37055873
Alignment:
Q  496 gctaataatttgagaaaattccataattcagtgtaat 532  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  37055909 gctaataatttgagaaaattacataatttagtgtaat 37055873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 535
Target Start/End: Complemental strand, 40285712 - 40285668
Alignment:
Q  491 acacggctaataatttgagaaaattccataattcagtgtaatcat 535  Q
    |||| |||||||||||||||||||  |||||||||||||| ||||    
T  40285712 acaccgctaataatttgagaaaatcgcataattcagtgtagtcat 40285668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 532
Target Start/End: Complemental strand, 40747838 - 40747790
Alignment:
Q  484 gacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||| ||||||| |||||||||||||||||  ||||||||| ||||||    
T  40747838 gacaccgacacggataataatttgagaaaatgacataattcaatgtaat 40747790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 495
Target Start/End: Complemental strand, 48040556 - 48040524
Alignment:
Q  463 acggacaccggacacgatacggacactgacacg 495  Q
    ||||||||||||||||| |||||||||||||||    
T  48040556 acggacaccggacacgacacggacactgacacg 48040524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 444 - 564
Target Start/End: Original strand, 9778452 - 9778581
Alignment:
Q  444 ctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgt 539  Q
    ||||||||||||||   ||||||||||||||||||||| |||||||||||||| ||| ||||||||| |||||  ||||||||||| ||||  || ||||    
T  9778452 ctatgaagcacggatacggacacggacaccggacacgacacggacactgacacagctgataatttgaaaaaatcacataattcagtataattacaagtgt 9778551  T
Q  540 cg-----gtgtcggacacaacacgtgtccg 564  Q
    ||     |||||||||||||||||||||||    
T  9778552 cggtgtcgtgtcggacacaacacgtgtccg 9778581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 496 - 564
Target Start/End: Original strand, 21880158 - 21880228
Alignment:
Q  496 gctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||||||||||||||||||| ||||||||||||||||  || ||||||||||||||||| |||| ||||||    
T  21880158 gctaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccg 21880228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 485 - 564
Target Start/End: Original strand, 20549786 - 20549867
Alignment:
Q  485 acactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||| ||||| |||||||||||||||||||  | ||||||||||||||   |||||||||||||||||||||||| ||||||    
T  20549786 acaccgacaccgctaataatttgagaaaatcacgtaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccg 20549867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 463 - 547
Target Start/End: Original strand, 27945006 - 27945100
Alignment:
Q  463 acggacaccggacacgatacggacactgacacggc--------taataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    ||||||||||||||||| ||||||||||||||| |        |||||||||||||||||| ||||||||||||||||  || ||||||||||||    
T  27945006 acggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcg 27945100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 531
Target Start/End: Complemental strand, 10230160 - 10230091
Alignment:
Q  462 cacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaa 531  Q
    ||||||||||||||| || |||||||||||| | | |||||||||||| ||||  |||||||||||||||    
T  10230160 cacggacaccggacatgacacggacactgactcagataataatttgaggaaatgacataattcagtgtaa 10230091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 490 - 552
Target Start/End: Original strand, 28155570 - 28155634
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacac 552  Q
    ||||| |||||||||||||||||||| |||||||| |||||||  || |||||||||||||||||    
T  28155570 gacaccgctaataatttgagaaaattacataattcggtgtaattacaagtgtcggtgtcggacac 28155634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 537
Target Start/End: Original strand, 2424595 - 2424661
Alignment:
Q  470 ccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaatcatgt 537  Q
    |||||||||| || |||||| ||||| ||||||||||||||||||  |||||||||||||||| ||||    
T  2424595 ccggacacgacacagacactaacacg-ctaataatttgagaaaatcacataattcagtgtaattatgt 2424661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 498 - 554
Target Start/End: Original strand, 4909159 - 4909217
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatc--atgtgtcggtgtcggacacaa 554  Q
    |||||||||||||||||| ||||||||| |||||||  ||||||| |||||||||||||    
T  4909159 taataatttgagaaaattacataattcattgtaatcatatgtgtcagtgtcggacacaa 4909217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 490 - 545
Target Start/End: Complemental strand, 29787428 - 29787373
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatcatgtgtcggtgt 545  Q
    ||||| |||||||||||||||||||  |||||||||||||||| |||||| |||||    
T  29787428 gacaccgctaataatttgagaaaatcacataattcagtgtaattatgtgttggtgt 29787373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 545
Target Start/End: Original strand, 11700784 - 11700858
Alignment:
Q  471 cggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaatcatgtgtcggtgt 545  Q
    ||||||||| |||||| ||||||| | ||||||||||| |||||  ||||||||| |||||| ||||||| ||||    
T  11700784 cggacacgacacggacgctgacaccgttaataatttgacaaaatcacataattcaatgtaattatgtgtctgtgt 11700858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 564
Target Start/End: Original strand, 24105678 - 24105754
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||| ||||||||||||| |||||| ||| ||||||||||||  || ||||||| ||||| ||||||| |||||||    
T  24105678 gacacagctaataatttgaaaaaattgcatgattcagtgtaattacaagtgtcggagtcgggcacaacatgtgtccg 24105754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 547
Target Start/End: Original strand, 30731037 - 30731094
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcg 547  Q
    ||||| || ||||||||||||||||  ||||||||||||||||  |||||||||||||    
T  30731037 gacaccgcgaataatttgagaaaatcacataattcagtgtaattgtgtgtcggtgtcg 30731094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 532
Target Start/End: Original strand, 8160410 - 8160458
Alignment:
Q  484 gacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||||| ||||||||||| |||||||| ||||||| ||||||||    
T  8160410 gacactgacaccgctaataatttaagaaaattacataatttagtgtaat 8160458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 549
Target Start/End: Complemental strand, 21568683 - 21568620
Alignment:
Q  488 ctgacacggctaataatttgagaaaattccataattcagtgtaatc--atgtgtcggtgtcgga 549  Q
    ||||||||||||||||||| |||||||  ||||||| |||||||||  ||| ||||||||||||    
T  21568683 ctgacacggctaataatttaagaaaatctcataattaagtgtaatcatatgagtcggtgtcgga 21568620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 532
Target Start/End: Original strand, 30813818 - 30813854
Alignment:
Q  496 gctaataatttgagaaaattccataattcagtgtaat 532  Q
    |||||||||||||||||||| ||||||||||||||||    
T  30813818 gctaataatttgagaaaattacataattcagtgtaat 30813854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 532
Target Start/End: Original strand, 13300381 - 13300452
Alignment:
Q  461 acacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    |||||||||||| |||||| ||||| |||||||   |||||||||||| |||||   |||||||||||||||    
T  13300381 acacggacaccgaacacgacacggatactgacataactaataatttgaaaaaatcatataattcagtgtaat 13300452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 532
Target Start/End: Complemental strand, 26033529 - 26033478
Alignment:
Q  481 acggacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    |||||||||||| | ||||||||||||| |||||  ||||||||||||||||    
T  26033529 acggacactgacgcagctaataatttgaaaaaatcacataattcagtgtaat 26033478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 552
Target Start/End: Original strand, 19213794 - 19213867
Alignment:
Q  481 acggacactgacacggctaataatttgagaaaattccataattcagtgtaa--tcatgtgtcggtgtcggacac 552  Q
    |||||||||||||| ||||||||||| | |||||  |||||| ||||||||   || |||||||||||||||||    
T  19213794 acggacactgacactgctaataattttaaaaaatcacataatgcagtgtaaatacaagtgtcggtgtcggacac 19213867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 32308120 - 32308162
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||| |||||||||||||||||||  ||||||||||||||||    
T  32308120 gacaccgctaataatttgagaaaatcacataattcagtgtaat 32308162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 527
Target Start/End: Complemental strand, 40132052 - 40131991
Alignment:
Q  465 ggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagt 527  Q
    ||||||||||||||  ||||||||||||||  |||||||||||| |||||  |||||||||||    
T  40132052 ggacaccggacacggcacggacactgacaccactaataatttga-aaaatcacataattcagt 40131991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 3652340 - 3652303
Alignment:
Q  517 cataattcagtgtaatcatgtgtcggtgtcggacacaa 554  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  3652340 cataattcaatgtaatcatgtgtcggtgtcagacacaa 3652303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 12289120 - 12289165
Alignment:
Q  496 gctaataatttgagaaaattccataattcagtgtaatcatgtgtcg 541  Q
    |||||||||||||||||||  |||||||||||| ||| ||||||||    
T  12289120 gctaataatttgagaaaatcacataattcagtggaattatgtgtcg 12289165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 564
Target Start/End: Original strand, 22484025 - 22484101
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||| ||||||||||| |||||||| ||||||||||| ||||   ||||||||||||| ||||  |||| ||||||    
T  22484025 gacaccgctaataattttagaaaattgcataattcagtataattatatgtgtcggtgtcagacatgacacatgtccg 22484101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 535
Target Start/End: Original strand, 23930219 - 23930264
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatcat 535  Q
    ||||||| || ||||||||||||||  |||||||||||||||||||    
T  23930219 gacacggatagtaatttgagaaaatgacataattcagtgtaatcat 23930264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 552
Target Start/End: Original strand, 25481902 - 25481966
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacac 552  Q
    ||||| ||||||||||||| |||||  ||||||||||||||||  || |||| ||||||||||||    
T  25481902 gacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgtcggacac 25481966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 552
Target Start/End: Original strand, 26733304 - 26733368
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacac 552  Q
    ||||| ||||||||||||| |||||  ||||||||||| ||||   |||||||||||||||||||    
T  26733304 gacaccgctaataatttgacaaaatcacataattcagtctaattaaatgtgtcggtgtcggacac 26733368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 547
Target Start/End: Original strand, 19992001 - 19992060
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcg 547  Q
    ||||| |||||||||||||||||||  |||| ||||||||||| ||  ||||||||||||    
T  19992001 gacacagctaataatttgagaaaatcacatatttcagtgtaattataagtgtcggtgtcg 19992060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 547
Target Start/End: Original strand, 24339642 - 24339701
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    ||||| ||||||||||||| |||||  ||||||||||||||||  || ||||||||||||    
T  24339642 gacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 24339701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 535
Target Start/End: Complemental strand, 29812742 - 29812678
Alignment:
Q  471 cggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaatcat 535  Q
    ||||||||| |||||||| ||| ||  |||||||||||||||||   |||||| |||||||||||    
T  29812742 cggacacgacacggacaccgacccgtataataatttgagaaaatgatataatttagtgtaatcat 29812678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 514
Target Start/End: Original strand, 41414870 - 41414910
Alignment:
Q  474 acacgatacggacactgacacggctaataatttgagaaaat 514  Q
    |||||| ||||||||||||||  ||||||||||||||||||    
T  41414870 acacgacacggacactgacaccactaataatttgagaaaat 41414910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 460 - 532
Target Start/End: Complemental strand, 6471978 - 6471906
Alignment:
Q  460 gacacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||| || |||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  6471978 gacacagaaaccggacatgacacggacactgacacggctaataatttgagaaaatcacataattcagtgtaat 6471906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 459 - 564
Target Start/End: Complemental strand, 21191154 - 21191039
Alignment:
Q  459 ggacacggacaccggacacgatacggacactgacacg--------gctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcgg 548  Q
    |||||| |||||||||||||| ||||||||||||| |        ||||||||||||| |||||  ||||||||||||||||  || |||||||||||||    
T  21191154 ggacactgacaccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgg 21191055  T
Q  549 acacaacacgtgtccg 564  Q
    ||||||||||||||||    
T  21191054 acacaacacgtgtccg 21191039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 532
Target Start/End: Complemental strand, 6326413 - 6326314
Alignment:
Q  443 cctatgaagcacgga--aggacacggacaccggacacgatacggacactgacacg--------gctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||||| |||  |||||||||| ||||||||||| |||||||||||||||        |||| ||||||||||||||| ||||||||||||||||    
T  6326413 cctatgaagcatggataaggacacggataccggacacgacacggacactgacacgccgacatcgctagtaatttgagaaaattacataattcagtgtaat 6326314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 485 - 563
Target Start/End: Original strand, 6770538 - 6770616
Alignment:
Q  485 acactgacacggctaataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcggacacaacacgtgtcc 563  Q
    ||||||||||  |||||||||| |||||||  |||||||||||||| | ||||||| ||||||||||| |||| |||||    
T  6770538 acactgacacaactaataatttaagaaaatcacataattcagtgtacttatgtgtcagtgtcggacacgacacatgtcc 6770616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 485 - 564
Target Start/End: Original strand, 42893355 - 42893436
Alignment:
Q  485 acactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||| ||||| ||||||||||||| |||||  |||||| |||||||||  || ||||||||||| |||||||||||||||||    
T  42893355 acaccgacacagctaataatttgaaaaaatcacataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccg 42893436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 498 - 552
Target Start/End: Original strand, 2548395 - 2548451
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcggacac 552  Q
    |||||||| ||||||||| |||||||||||||||||||  |||||||||||||||||    
T  2548395 taataattagagaaaattacataattcagtgtaatcataagtgtcggtgtcggacac 2548451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 484 - 540
Target Start/End: Original strand, 2419851 - 2419907
Alignment:
Q  484 gacactgacacggctaataatttgagaaaattccataattcagtgtaatcatgtgtc 540  Q
    ||||| ||||| | |||||||||||||||||| || |||||||||||||||||||||    
T  2419851 gacacggacactgataataatttgagaaaattacacaattcagtgtaatcatgtgtc 2419907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 564
Target Start/End: Complemental strand, 30502446 - 30502371
Alignment:
Q  491 acacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||| |||||||||||||||||||  | ||||||||||||||   ||||||||||||||||||| |||| ||||||    
T  30502446 acaccgctaataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccg 30502371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 564
Target Start/End: Complemental strand, 30542789 - 30542714
Alignment:
Q  491 acacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||| |||||||||||||||||||  | ||||||||||||||   ||||||||||||||||||| |||| ||||||    
T  30542789 acaccgctaataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccg 30542714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 490 - 562
Target Start/End: Original strand, 27932235 - 27932309
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtc 562  Q
    ||||| |||||||||||||||||||| ||||||||||||||||  ||  | | |||||||||||| |||||||||    
T  27932235 gacaccgctaataatttgagaaaattacataattcagtgtaattacaaatcttggtgtcggacacgacacgtgtc 27932309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 461 - 532
Target Start/End: Complemental strand, 32767031 - 32766960
Alignment:
Q  461 acacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    |||| ||||| |||||||| |||||||| ||||| |||||||||||||||||||  || |||||| ||||||    
T  32767031 acacagacactggacacgacacggacaccgacaccgctaataatttgagaaaatcgcacaattcaatgtaat 32766960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 552
Target Start/End: Original strand, 6247588 - 6247686
Alignment:
Q  464 cggacaccggacacgatacggacactgacacggc--------taataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacac 552  Q
    |||||||||||||||||||| ||||||||||| |        ||||||||||| |||||  ||||||||||||||||  || |||||||||||||||||    
T  6247588 cggacaccggacacgatacgcacactgacacgccgacacatctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacac 6247686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 552
Target Start/End: Complemental strand, 11596506 - 11596452
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcggacac 552  Q
    |||||||||||||||||  ||||||||| |||||||||| |||||||| ||||||    
T  11596506 taataatttgagaaaatgacataattcaatgtaatcatgcgtcggtgttggacac 11596452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 562
Target Start/End: Complemental strand, 21576803 - 21576730
Alignment:
Q  491 acacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtc 562  Q
    |||| ||||||||||||| |||||  ||||||||||||||||  || |||||| |||||||||| |||||||||    
T  21576803 acacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcgatgtcggacacgacacgtgtc 21576730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 557
Target Start/End: Complemental strand, 28588725 - 28588664
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcggacacaacac 557  Q
    |||||||||||||||||  |||||||||||||||| ||  ||||||||||||||||| ||||    
T  28588725 taataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtcggacacgacac 28588664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 490 - 551
Target Start/End: Complemental strand, 16203854 - 16203791
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggaca 551  Q
    ||||| |||||||||||||||||||  ||||||| ||||||||   ||||||||||||||||||    
T  16203854 gacactgctaataatttgagaaaatctcataatttagtgtaattatatgtgtcggtgtcggaca 16203791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 524
Target Start/End: Complemental strand, 19746757 - 19746717
Alignment:
Q  484 gacactgacacggctaataatttgagaaaattccataattc 524  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  19746757 gacactgacaccgctaataatttgagaaaattacataattc 19746717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 495
Target Start/End: Original strand, 15382420 - 15382474
Alignment:
Q  443 cctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacg 495  Q
    |||||||||||||||   ||||||||||||||||||||| ||||||| |||||||    
T  15382420 cctatgaagcacggatacggacacggacaccggacacgacacggacaatgacacg 15382474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 495
Target Start/End: Original strand, 21522693 - 21522747
Alignment:
Q  443 cctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacg 495  Q
    |||||||||||||||   |||||||| |||||||||||| |||||||||||||||    
T  21522693 cctatgaagcacggatacggacacggtcaccggacacgacacggacactgacacg 21522747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 495
Target Start/End: Original strand, 21533259 - 21533313
Alignment:
Q  443 cctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacg 495  Q
    |||||||||||||||   |||||||| |||||||||||| |||||||||||||||    
T  21533259 cctatgaagcacggatacggacacggtcaccggacacgacacggacactgacacg 21533313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 564
Target Start/End: Complemental strand, 32630796 - 32630718
Alignment:
Q  488 ctgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||||| | ||||||||||||||||||  |||||||| ||||||   ||||||| |||||||| || |||||||||||    
T  32630796 ctgacaccgataataatttgagaaaattatataattcaatgtaattatatgtgtcagtgtcggatacgacacgtgtccg 32630718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 547
Target Start/End: Original strand, 36838544 - 36838602
Alignment:
Q  491 acacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    |||| |||||||||||||||||||| ||||||| ||||||||   ||||||||||||||    
T  36838544 acaccgctaataatttgagaaaattacataatttagtgtaattatatgtgtcggtgtcg 36838602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 43001800 - 43001842
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||    
T  43001800 gacactgctaataatttgaaaaaattacataattcagtgtaat 43001842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 564
Target Start/End: Complemental strand, 18421900 - 18421824
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||| ||| |||||||||||||||  |||||| |||||||||   ||||||||| ||||||||| |||| ||||||    
T  18421900 gacactgctgataatttgagaaaatcacataatccagtgtaattatatgtgtcggcgtcggacacgacacatgtccg 18421824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 535
Target Start/End: Original strand, 31264446 - 31264483
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcat 535  Q
    |||||||||||||||||  |||||||||||||||||||    
T  31264446 taataatttgagaaaatgacataattcagtgtaatcat 31264483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 2236857 - 2236802
Alignment:
Q  476 acgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||||||||||||| ||||||||||| ||||||||  |||||| | ||||||    
T  2236857 acgatacggacactgacac-gctaataatttaagaaaattatataatttaatgtaat 2236802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 547
Target Start/End: Original strand, 3966503 - 3966562
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    ||||| |||||||||||||||||||  || |||||||||||||   ||||||||||||||    
T  3966503 gacaccgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcg 3966562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 495
Target Start/End: Complemental strand, 13287497 - 13287461
Alignment:
Q  459 ggacacggacaccggacacgatacggacactgacacg 495  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  13287497 ggacacggacaccggacacgacacggacactaacacg 13287461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 495
Target Start/End: Original strand, 22013379 - 22013411
Alignment:
Q  463 acggacaccggacacgatacggacactgacacg 495  Q
    ||||||||||||||||| |||||||||||||||    
T  22013379 acggacaccggacacgacacggacactgacacg 22013411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 532
Target Start/End: Complemental strand, 24273095 - 24273047
Alignment:
Q  484 gacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||||| | || ||||||||||||||  ||||||||||||||||    
T  24273095 gacactgacacagttattaatttgagaaaatcacataattcagtgtaat 24273047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 532
Target Start/End: Original strand, 24389119 - 24389167
Alignment:
Q  484 gacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||||| | || ||||||||||||||  ||||||||||||||||    
T  24389119 gacactgacacagttattaatttgagaaaatcacataattcagtgtaat 24389167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 532
Target Start/End: Original strand, 39698539 - 39698583
Alignment:
Q  488 ctgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||| ||||||||||||| |||||  ||||||||||||||||    
T  39698539 ctgacacagctaataatttgaaaaaatcacataattcagtgtaat 39698583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 532
Target Start/End: Complemental strand, 41091322 - 41091274
Alignment:
Q  484 gacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||| ||||| |||||| ||||||||||||  ||||||||||||||||    
T  41091322 gacacggacactgctaatgatttgagaaaatcacataattcagtgtaat 41091274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 445 - 547
Target Start/End: Original strand, 44860273 - 44860379
Alignment:
Q  445 tatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtc 540  Q
    |||||||||||||   ||| ||| ||||| ||||||| |||||||||||||| |||||||||||||||||||  ||||||||||||||||   |||||||    
T  44860273 tatgaagcacggatacggatacgtacaccagacacgacacggacactgacaccgctaataatttgagaaaatcgcataattcagtgtaattatatgtgtc 44860372  T
Q  541 ggtgtcg 547  Q
    |||||||    
T  44860373 ggtgtcg 44860379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 564
Target Start/End: Complemental strand, 38117247 - 38117142
Alignment:
Q  463 acggacaccggacacgatacggacact--gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacg 558  Q
    ||||||||||||||||| || |||||   ||||| ||||||||||||| |||||  |||| ||| |||||||  || |||| ||||||||||||||||||    
T  38117247 acggacaccggacacgacactgacacgccgacacagctaataatttgaaaaaatcacatacttcggtgtaattacaagtgttggtgtcggacacaacacg 38117148  T
Q  559 tgtccg 564  Q
    ||||||    
T  38117147 tgtccg 38117142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 498 - 552
Target Start/End: Complemental strand, 30298498 - 30298444
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcggacac 552  Q
    ||||||||| | |||||  ||||||||||||||||||||||||||||||||||||    
T  30298498 taataatttaataaaatgacataattcagtgtaatcatgtgtcggtgtcggacac 30298444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 535
Target Start/End: Original strand, 12748653 - 12748729
Alignment:
Q  461 acacggacaccggacacgatacggacac--tgacacggctaataatttgagaaaattccataattcagtgtaatcat 535  Q
    |||| |||||||||||||| ||||||||  ||||| || |||||||||||||||||  |||| ||||||||||||||    
T  12748653 acacagacaccggacacgacacggacacgctgacatggataataatttgagaaaatgacatagttcagtgtaatcat 12748729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 498 - 564
Target Start/End: Original strand, 15972881 - 15972949
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||||||||| |||||| || |||||||||||||  || ||||||||||||||||| |||||||||||    
T  15972881 taataatttgaaaaaattacacaattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccg 15972949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 21782877 - 21782820
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcg 547  Q
    ||||| |||||||||||||||||||  |||||||||||||||| ||||| ||||||||    
T  21782877 gacactgctaataatttgagaaaatcacataattcagtgtaattatgtgccggtgtcg 21782820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 531
Target Start/End: Complemental strand, 24975411 - 24975343
Alignment:
Q  462 cacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaa 531  Q
    |||||||||||||||||| || ||||| ||||| |||||||||||||||||||   ||||||||||||||    
T  24975411 cacggacaccggacacgacactgacac-gacaccgctaataatttgagaaaatcgtataattcagtgtaa 24975343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 488 - 564
Target Start/End: Complemental strand, 2438780 - 2438702
Alignment:
Q  488 ctgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||||| ||||||||||| | |||||  ||||||||||||||||  || ||||||||||||||||| |||| ||||||    
T  2438780 ctgacacagctaataatttcaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccg 2438702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 561
Target Start/End: Original strand, 18276483 - 18276594
Alignment:
Q  460 gacacggacaccggacacgatacggacactga--------cacggctaataatttgagaaaattccataattcagtgtaatca--tgtgtcggtgtcgga 549  Q
    ||||||||||||||||||||||| ||||||||        ||| |||||||||||||||||||  | |||||||||||||| |  |||||||||||| ||    
T  18276483 gacacggacaccggacacgatacagacactgatatgccgacaccgctaataatttgagaaaatcacttaattcagtgtaattatgtgtgtcggtgtcaga 18276582  T
Q  550 cacaacacgtgt 561  Q
     || ||||||||    
T  18276583 taccacacgtgt 18276594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 547
Target Start/End: Original strand, 2331802 - 2331851
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcg 547  Q
    |||||||||||||||||  |||||||||||||| | ||||||||||||||    
T  2331802 taataatttgagaaaatcacataattcagtgtatttatgtgtcggtgtcg 2331851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 20242768 - 20242712
Alignment:
Q  508 agaaaattccataattcagtgtaatcat--gtgtcggtgtcggacacaacacgtgtc 562  Q
    |||||||  |||||||||||||||| ||  |||||||||||||||||||||||||||    
T  20242768 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacaacacgtgtc 20242712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 564
Target Start/End: Complemental strand, 30404909 - 30404833
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||||| ||||||||||| |||||  ||||||||||||||||  || ||||||| ||||||||| |||| ||||||    
T  30404909 gacacggttaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggcgtcggacacgacacatgtccg 30404833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 546
Target Start/End: Original strand, 1327970 - 1328034
Alignment:
Q  482 cggacactgacacggctaataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtc 546  Q
    ||||||| ||||| |||||||||||||||||||   | |||||||| |||| |||||||||||||    
T  1327970 cggacaccgacaccgctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtc 1328034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 513
Target Start/End: Complemental strand, 18631495 - 18631443
Alignment:
Q  461 acacggacaccggacacgatacggacactgacacggctaataatttgagaaaa 513  Q
    ||||||||||||||||||| ||||||||| ||||  |||||||||||| ||||    
T  18631495 acacggacaccggacacgacacggacactaacacctctaataatttgaaaaaa 18631443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 546
Target Start/End: Complemental strand, 18889679 - 18889592
Alignment:
Q  462 cacggacaccggacacgatacggacact-gacacggctaataatttgagaaaattccataattcagtgtaatc--atgtgtcggtgtc 546  Q
    |||| ||||| ||||||| ||||||||  ||| | |||||||| ||||||||||  |||||||||||||||||  |||||||||||||    
T  18889679 cacgaacaccagacacgacacggacacgcgacgccgctaataaattgagaaaatcacataattcagtgtaatcatatgtgtcggtgtc 18889592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 544
Target Start/End: Original strand, 28412311 - 28412404
Alignment:
Q  459 ggacacggacaccggacacgatacggacactgacacggc--------taataatttgagaaaattccataattcagtgtaatcatgtgtcggtg 544  Q
    ||||||||||||| ||||||| ||||||||| ||||| |        ||||||||||| |||||  |||||||||||||||| |||||||||||    
T  28412311 ggacacggacaccagacacgacacggacactaacacgtcaacaccgttaataatttgataaaatcacataattcagtgtaattatgtgtcggtg 28412404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 546
Target Start/End: Complemental strand, 42832340 - 42832277
Alignment:
Q  485 acactgacacggctaataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtc 546  Q
    |||| ||||| |||||||||||||||||||| |||| ||||||||||| ||  |||||||||||    
T  42832340 acaccgacaccgctaataatttgagaaaattacatatttcagtgtaattataagtgtcggtgtc 42832277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 557
Target Start/End: Original strand, 5367199 - 5367261
Alignment:
Q  497 ctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacac 557  Q
    ||||||||||||| ||||  ||||||||||||||||   ||||||||||||||||||| ||||    
T  5367199 ctaataatttgaggaaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacac 5367261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 564
Target Start/End: Complemental strand, 18841074 - 18840996
Alignment:
Q  488 ctgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||||||  |||||||||||| |||||| ||||||| ||||||||  || ||||||||||| ||||| |||| ||||||    
T  18841074 ctgacacaactaataatttgaaaaaattacataattaagtgtaattacaagtgtcggtgtcagacacgacacatgtccg 18840996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 532
Target Start/End: Complemental strand, 21374809 - 21374716
Alignment:
Q  444 ctatgaagcacggaa--ggacacggacaccggacacg-atacggacact--gacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||||||||   |||||||||||||||||||| | ||  ||||   ||||| ||||||||||||| |||||| ||||||||||||||||    
T  21374809 ctatgaagcacggatacggacacggacaccggacacggacactaacacgccgacacagctaataatttgaaaaaattacataattcagtgtaat 21374716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 535
Target Start/End: Complemental strand, 29970629 - 29970563
Alignment:
Q  471 cggacacgatacggacac--tgacacggctaataatttgagaaaattccataattcagtgtaatcat 535  Q
    ||||||||| || |||||  |||||| |||||||||||||||||||  |||| ||||||||||||||    
T  29970629 cggacacgacactgacacattgacaccgctaataatttgagaaaatcgcatagttcagtgtaatcat 29970563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 21616762 - 21616804
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||| |||||||||||||||||||  ||||||||||||||||    
T  21616762 gacaccgctaataatttgagaaaatcacataattcagtgtaat 21616804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 532
Target Start/End: Original strand, 23921261 - 23921295
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaat 532  Q
    |||||||||||||||||| ||||||||||||||||    
T  23921261 taataatttgagaaaattacataattcagtgtaat 23921295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 39323264 - 39323306
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||    
T  39323264 gacaccgctaataatttgacaaaattacataattcagtgtaat 39323306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 501
Target Start/End: Complemental strand, 40068459 - 40068417
Alignment:
Q  459 ggacacggacaccggacacgatacggacactgacacggctaat 501  Q
    |||||||||||| |||||||| |||||||| ||||||||||||    
T  40068459 ggacacggacacgggacacgacacggacacggacacggctaat 40068417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 535
Target Start/End: Complemental strand, 10535810 - 10535773
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcat 535  Q
    |||||||||||||||||  |||||||||||||||||||    
T  10535810 taataatttgagaaaatgacataattcagtgtaatcat 10535773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 550
Target Start/End: Original strand, 22085002 - 22085066
Alignment:
Q  488 ctgacacggctaataatttgagaaaattccataattcagtgtaatca--tgtgtcggtgtcggac 550  Q
    ||||||||  ||||||||| |||||||  ||||||| ||||||||||  ||||||||||||||||    
T  22085002 ctgacacgtataataatttaagaaaatgacataatttagtgtaatcatttgtgtcggtgtcggac 22085066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 552
Target Start/End: Complemental strand, 34007042 - 34006986
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcggacac 552  Q
    ||||||||||||||| |  |||||||||||||||||||  |||||||||| ||||||    
T  34007042 taataatttgagaaattgacataattcagtgtaatcataggtgtcggtgtgggacac 34006986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 564
Target Start/End: Complemental strand, 37411303 - 37411227
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||| |||||||||||||||||||  ||||||||||||| ||   |||||||| ||||| |||| || ||||||||    
T  37411303 gacaccgctaataatttgagaaaatcacataattcagtgtgattatatgtgtcgatgtcgaacacgacgcgtgtccg 37411227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 532
Target Start/End: Complemental strand, 31456706 - 31456658
Alignment:
Q  484 gacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||||| ||||||||||| ||||||||   ||||||||||||||    
T  31456706 gacactgacaccgctaataatttaagaaaattatgtaattcagtgtaat 31456658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 546
Target Start/End: Complemental strand, 36409686 - 36409630
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtc 546  Q
    ||||| ||| ||||||||| |||||  ||||||| |||||||| |||||||||||||    
T  36409686 gacaccgctgataatttgaaaaaatcacataatttagtgtaattatgtgtcggtgtc 36409630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 441 - 564
Target Start/End: Complemental strand, 23293104 - 23292969
Alignment:
Q  441 aacctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacg--------gctaataatttgagaaaattccataattcagtgta 530  Q
    |||||||||||||| ||   ||||||||||||||||||||| ||||||| |||||||        ||||||||||||| |||||  ||||||||||| ||    
T  23293104 aacctatgaagcacagatacggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtata 23293005  T
Q  531 at--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||  || ||||||||||||||||| |||||||||||    
T  23293004 attacaagtgtcggtgtcggacacgacacgtgtccg 23292969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 481 - 570
Target Start/End: Complemental strand, 54580091 - 54580000
Alignment:
Q  481 acggacactgacacggctaataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcggacacaacacgtgtccgtccttc 570  Q
    |||||| |||||||  |||||||||||| |||||  |||||||||||||||| ||  ||||||||||||||||| |||||||||||| ||||    
T  54580091 acggacgctgacacaactaataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgtgcttc 54580000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 444 - 564
Target Start/End: Original strand, 4157102 - 4157225
Alignment:
Q  444 ctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgt 539  Q
    ||||||||||||||   ||||||||||||| ||||||| || |||||||||||  |||||||||||| |||||  ||||||| |||| |||  || ||||    
T  4157102 ctatgaagcacggatacggacacggacaccagacacgacacagacactgacacaactaataatttga-aaaatcacataatttagtgcaattacaagtgt 4157200  T
Q  540 cggtgtcggacacaacacgtgtccg 564  Q
    ||||||||||||| |||| ||||||    
T  4157201 cggtgtcggacacgacacatgtccg 4157225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 543
Target Start/End: Complemental strand, 21873460 - 21873377
Alignment:
Q  460 gacacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaatcatgtgtcggt 543  Q
    ||||||||||  |||||||| |||||||||||||| || |||||||||| |||||  |||||||||||| ||| ||||| ||||    
T  21873460 gacacggacattggacacgacacggacactgacactgcaaataatttgataaaatcacataattcagtgaaattatgtgccggt 21873377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 543
Target Start/End: Complemental strand, 21929321 - 21929238
Alignment:
Q  460 gacacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaatcatgtgtcggt 543  Q
    ||||||||||  |||||||| |||||||||||||| || |||||||||| |||||  |||||||||||| ||| ||||| ||||    
T  21929321 gacacggacattggacacgacacggacactgacactgcaaataatttgataaaatcacataattcagtgaaattatgtgccggt 21929238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 481 - 564
Target Start/End: Original strand, 29205435 - 29205520
Alignment:
Q  481 acggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||||||  |||||||||||||||||| |||||  ||||||||||||||||  || |||||||||| |||||| |||| ||||||    
T  29205435 acggacaccaacacggctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtccg 29205520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 554
Target Start/End: Complemental strand, 17425441 - 17425384
Alignment:
Q  497 ctaataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcggacacaa 554  Q
    ||||||||||||||||||  |||||||||||||||| ||||||| ||||| |||||||    
T  17425441 ctaataatttgagaaaatcgcataattcagtgtaattatgtgtctgtgtcagacacaa 17425384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 564
Target Start/End: Original strand, 9996813 - 9996916
Alignment:
Q  463 acggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtg 560  Q
    |||||||||| |||||| || ||||| ||||| |  ||||||||||||||||  ||||||||||| ||||   |||| |||||||| |||| ||||||||    
T  9996813 acggacaccgaacacgacacagacaccgacactgacaataatttgagaaaatcacataattcagtataattatatgtctcggtgtcagacataacacgtg 9996912  T
Q  561 tccg 564  Q
    ||||    
T  9996913 tccg 9996916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 532
Target Start/End: Original strand, 37203219 - 37203306
Alignment:
Q  441 aacctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    |||||||||||||||||   |||||||||||||||||||||      ||| ||||||||||||||||||| |||||  ||||||| ||||||||    
T  37203219 aacctatgaagcacggatatggacacggacaccggacacga------cacagacacggctaataatttgaaaaaatgacataatttagtgtaat 37203306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 495
Target Start/End: Original strand, 20633429 - 20633482
Alignment:
Q  444 ctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacg 495  Q
    ||||||||||||||   ||||||||||||| |||||||||||||||||||||||    
T  20633429 ctatgaagcacggatacggacacggacaccagacacgatacggacactgacacg 20633482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 24343507 - 24343549
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||| |||||||||||||||||| ||||||||||||||||    
T  24343507 gacacggataataatttgagaaaattacataattcagtgtaat 24343549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 552
Target Start/End: Complemental strand, 8423777 - 8423713
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcggacac 552  Q
    ||||| |||||||||||||||||||  |||||||||||||||| ||   ||||||||||||||||    
T  8423777 gacaccgctaataatttgagaaaatcacataattcagtgtaattataaatgtcggtgtcggacac 8423713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 535
Target Start/End: Complemental strand, 20743337 - 20743292
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatcat 535  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||    
T  20743337 gacacggataataatttgagaaaatgacataattcagtgtaatcat 20743292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 564
Target Start/End: Original strand, 21945503 - 21945579
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||| ||||||||||||| |||||  ||||||||||||||||  || ||||||||||||||||  |||| ||||||    
T  21945503 gacacagctaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacatgacacatgtccg 21945579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 535
Target Start/End: Complemental strand, 43300030 - 43299985
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatcat 535  Q
    ||||||| |||||||||||||||||| ||||||||| |||||||||    
T  43300030 gacacggataataatttgagaaaattacataattcaatgtaatcat 43299985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 535
Target Start/End: Original strand, 43300616 - 43300661
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatcat 535  Q
    ||||||| |||||||||||||||||| ||||||||| |||||||||    
T  43300616 gacacggataataatttgagaaaattacataattcaatgtaatcat 43300661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 563
Target Start/End: Original strand, 49431025 - 49431101
Alignment:
Q  490 gacacggctaataatttgagaaaattc-cataattcagtgtaatcat--gtgtcggtgtcggacacaacacgtgtcc 563  Q
    ||||| ||||||||||||| |||| || |||||||||||||||| |   ||||||||||||||||| ||||||||||    
T  49431025 gacacagctaataatttgaaaaaaatcacataattcagtgtaattaaaagtgtcggtgtcggacacgacacgtgtcc 49431101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 547
Target Start/End: Original strand, 56257933 - 56257990
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcg 547  Q
    ||||| |||||||||||||||||||   ||||||||||||||| ||||||| ||||||    
T  56257933 gacactgctaataatttgagaaaatcatataattcagtgtaattatgtgtctgtgtcg 56257990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 562
Target Start/End: Complemental strand, 2362039 - 2361960
Alignment:
Q  485 acactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtc 562  Q
    |||| ||||| ||||||||||||| |||||| ||||||| ||||||||   | ||||||||||||||||| || ||||||    
T  2362039 acaccgacacagctaataatttgaaaaaattacataatttagtgtaattaaaagtgtcggtgtcggacacgactcgtgtc 2361960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 490 - 561
Target Start/End: Complemental strand, 4672144 - 4672071
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgta---atcatgtgtcggtgtcggacacaacacgtgt 561  Q
    ||||| |||||||||||| ||||||| ||||||||||||||   || |||||||||||||||| |||| ||||||    
T  4672144 gacacagctaataatttgggaaaattacataattcagtgtagctat-atgtgtcggtgtcggatacaaaacgtgt 4672071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 564
Target Start/End: Original strand, 16886609 - 16886683
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||||||||| ||||||||||| |  |||||||||||| ||| |||||| |||| | ||||| ||| |||||||    
T  16886609 gacacggctaaaaatttgagaaattcacataattcagtgaaataatgtgttggtgacagacactacatgtgtccg 16886683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 32910551 - 32910593
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||| |||||||||||||||||  ||||||||||||||||    
T  32910551 gacacggataataatttgagaaaatgacataattcagtgtaat 32910593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 553
Target Start/End: Original strand, 16189710 - 16189774
Alignment:
Q  491 acacggctaataatttgagaaaattccataattcagtgtaatca--tgtgtcggtgtcggacaca 553  Q
    |||| ||||| |||||||||||||  |||||||||||||||| |  |||||||||| ||||||||    
T  16189710 acaccgctaaaaatttgagaaaatcacataattcagtgtaattatgtgtgtcggtgacggacaca 16189774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 557
Target Start/End: Complemental strand, 28964314 - 28964238
Alignment:
Q  483 ggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacac 557  Q
    ||||| |||||  ||||||||||||| |||||  ||||||||||||||||  || ||||| ||||||||||| ||||    
T  28964314 ggacattgacatagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtctgtgtcggacacgacac 28964238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 535
Target Start/End: Complemental strand, 31243599 - 31243562
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcat 535  Q
    |||||||||||||||||  |||||||||||||||||||    
T  31243599 taataatttgagaaaatgacataattcagtgtaatcat 31243562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Original strand, 55867611 - 55867640
Alignment:
Q  534 atgtgtcggtgtcggacacaacacgtgtcc 563  Q
    ||||||||||||||||||||||||||||||    
T  55867611 atgtgtcggtgtcggacacaacacgtgtcc 55867640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 551
Target Start/End: Original strand, 56049845 - 56049939
Alignment:
Q  460 gacacggacaccggacacgatacggacac--tgacacggctaataatttgagaaaattccataattcagtgtaatc--atgtgtcggtgtcggaca 551  Q
    |||||||||||||||||||| ||||||||   ||||| | |||||||||||| ||||  |||| |||| |||||||  ||||||||||||| ||||    
T  56049845 gacacggacaccggacacgacacggacacatcgacaccgataataatttgag-aaatgacatagttcaatgtaatcatatgtgtcggtgtcagaca 56049939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 535
Target Start/End: Complemental strand, 18513307 - 18513255
Alignment:
Q  483 ggacactgacacggctaataatttgagaaaattccataattcagtgtaatcat 535  Q
    |||||| ||||| | |||||||||||||||||  ||||||||| |||||||||    
T  18513307 ggacacagacaccgataataatttgagaaaatgacataattcaatgtaatcat 18513255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 541
Target Start/End: Complemental strand, 34589766 - 34589714
Alignment:
Q  489 tgacacggctaataatttgagaaaattccataattcagtgtaatcatgtgtcg 541  Q
    |||||| | ||| |||||||||||||  ||||||||| |||||||||||||||    
T  34589766 tgacaccgataacaatttgagaaaatgacataattcaatgtaatcatgtgtcg 34589714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 495
Target Start/End: Complemental strand, 35158083 - 35158047
Alignment:
Q  459 ggacacggacaccggacacgatacggacactgacacg 495  Q
    ||||||||||||||||||| | |||||||||||||||    
T  35158083 ggacacggacaccggacacaacacggacactgacacg 35158047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 535
Target Start/End: Complemental strand, 46180986 - 46180950
Alignment:
Q  499 aataatttgagaaaattccataattcagtgtaatcat 535  Q
    ||||||||||||||||  |||||||||||||||||||    
T  46180986 aataatttgagaaaataacataattcagtgtaatcat 46180950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 532
Target Start/End: Original strand, 51701252 - 51701300
Alignment:
Q  484 gacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||| ||||| ||||||||||||| |||||| ||||||| ||||||||    
T  51701252 gacacggacacagctaataatttgaaaaaattacataattgagtgtaat 51701300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 460 - 547
Target Start/End: Original strand, 25566811 - 25566900
Alignment:
Q  460 gacacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    ||||| ||||||||||| || || ||||||||||| ||||||||||||| |||||  ||||||||||||||||  || ||||||||||||    
T  25566811 gacacagacaccggacatgacacagacactgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 25566900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 496 - 562
Target Start/End: Complemental strand, 37283863 - 37283797
Alignment:
Q  496 gctaataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcggacacaacacgtgtc 562  Q
    ||||||||| |||||||||  |||||||||||||||| |||||||||||| |||||| |||||||||    
T  37283863 gctaataatctgagaaaatcacataattcagtgtaattatgtgtcggtgtgggacacgacacgtgtc 37283797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 463 - 563
Target Start/End: Original strand, 40332170 - 40332266
Alignment:
Q  463 acggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtg 560  Q
    ||||||||||||||||| ||||||||||      | ||||||||||||||||  ||||||||||||||||  || |||||||||| |||||| |||||||    
T  40332170 acggacaccggacacgacacggacactg------caaataatttgagaaaatcacataattcagtgtaattacaagtgtcggtgtgggacacgacacgtg 40332263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 564
Target Start/End: Complemental strand, 926884 - 926771
Alignment:
Q  461 acacggacaccggacacgatacggacactgacacggc--------taataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcggac 550  Q
    ||||||||||||||||||| ||||||||||||||| |        |||||||||||||||||  |||  ||||||||||| ||  |||||||||||||||    
T  926884 acacggacaccggacacgacacggacactgacacgccaacactcctaataatttgagaaaatctcattgttcagtgtaattataagtgtcggtgtcggac 926785  T
Q  551 acaacacgtgtccg 564  Q
     | |||||||||||    
T  926784 gcgacacgtgtccg 926771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 496 - 562
Target Start/End: Original strand, 3025557 - 3025625
Alignment:
Q  496 gctaataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcggacacaacacgtgtc 562  Q
    |||||||||||||||||||  |||||||||||||||| ||  ||||| ||||||||||| |||||||||    
T  3025557 gctaataatttgagaaaatcacataattcagtgtaattataggtgtcagtgtcggacacgacacgtgtc 3025625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 459 - 547
Target Start/End: Original strand, 8342941 - 8343031
Alignment:
Q  459 ggacacggacaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    ||||||||||| ||||||||| || ||||| ||||  ||||||||||||| |||||  ||||||| ||||||||  || ||||||||||||    
T  8342941 ggacacggacatcggacacgacactgacaccgacatagctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcg 8343031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 564
Target Start/End: Complemental strand, 20679447 - 20679378
Alignment:
Q  497 ctaataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||||||||||||||||  |||| ||||||||||| ||  ||||||||||| ||| |||||||||||||    
T  20679447 ctaataatttgagaaaatcacatagttcagtgtaattataagtgtcggtgtcagacgcaacacgtgtccg 20679378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 553
Target Start/End: Original strand, 34897085 - 34897150
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacaca 553  Q
    ||||| |||||||||||||||||||  ||||||||||||||||   |||||||| |||||||||||    
T  34897085 gacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcggacaca 34897150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 552
Target Start/End: Complemental strand, 13844655 - 13844591
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacac 552  Q
    ||||| |||||||||||||||||||  ||||||| ||||||||   |||||||||||||||||||    
T  13844655 gacactgctaataatttgagaaaatcacataattgagtgtaattatatgtgtcggtgtcggacac 13844591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 497 - 566
Target Start/End: Original strand, 14134706 - 14134777
Alignment:
Q  497 ctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccgtc 566  Q
    ||||||||||||||||||  ||||||||||||||||   || ||||||||||  |||| |||||||||||||    
T  14134706 ctaataatttgagaaaatcacataattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtccgtc 14134777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 565
Target Start/End: Original strand, 22595965 - 22596071
Alignment:
Q  463 acggacaccggacacgatacggacact--gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacg 558  Q
    ||||||||||||||| | || |||||   ||||| ||||||||||| | |||||  ||||||||||||||||  || |||| |||||||||| | |||||    
T  22595965 acggacaccggacacaacactgacacgccgacacagctaataatttaaaaaaataacataattcagtgtaattacaagtgttggtgtcggacgcgacacg 22596064  T
Q  559 tgtccgt 565  Q
    |||||||    
T  22596065 tgtccgt 22596071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 535
Target Start/End: Original strand, 40063928 - 40063996
Alignment:
Q  467 acaccggacacgatacggacactgacacggctaataatttgagaaaattccataattcagtgtaatcat 535  Q
    |||| |||||||| |||||||| |||||   |||||||||||||||||  ||||||||| |||||||||    
T  40063928 acactggacacgacacggacaccgacaccaataataatttgagaaaatgacataattcattgtaatcat 40063996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 532
Target Start/End: Original strand, 4611529 - 4611576
Alignment:
Q  485 acactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    |||| ||||| |||||||||||||||||||  ||||||||||||||||    
T  4611529 acaccgacaccgctaataatttgagaaaataacataattcagtgtaat 4611576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 532
Target Start/End: Original strand, 7658470 - 7658505
Alignment:
Q  497 ctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||||||||||||| ||||||||||||||||    
T  7658470 ctaataatttgagaaaattacataattcagtgtaat 7658505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 532
Target Start/End: Original strand, 13203648 - 13203683
Alignment:
Q  497 ctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||||||||||||||||| ||||||||||||||||    
T  13203648 ctaataatttgagaaaattacataattcagtgtaat 13203683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 512
Target Start/End: Complemental strand, 16642081 - 16642011
Alignment:
Q  444 ctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacggctaataatttgagaaa 512  Q
    ||||||||||||||   ||| |||||| |||||||||| || |||||||||||  ||||||||||||||||    
T  16642081 ctatgaagcacggatacggatacggacgccggacacgacacagacactgacacaactaataatttgagaaa 16642011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 552
Target Start/End: Original strand, 4948659 - 4948716
Alignment:
Q  497 ctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacac 552  Q
    |||||||||||| |||||  ||||||||||||||||  || |||||||||||||||||    
T  4948659 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacac 4948716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 553
Target Start/End: Original strand, 12985400 - 12985457
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatc--atgtgtcggtgtcggacaca 553  Q
    |||||||||||||||||  ||||||||| |||||||  || |||||||||||||||||    
T  12985400 taataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgtcggacaca 12985457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 547
Target Start/End: Original strand, 24669431 - 24669492
Alignment:
Q  488 ctgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    ||||||| | |||||||||||| ||||| ||||||||||||||||  || ||||||||||||    
T  24669431 ctgacaccgttaataatttgaggaaattacataattcagtgtaattacaagtgtcggtgtcg 24669492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 535
Target Start/End: Complemental strand, 14513225 - 14513188
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcat 535  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  14513225 taataatttgagaaaattacataattcagcgtaatcat 14513188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 514
Target Start/End: Complemental strand, 18069238 - 18069166
Alignment:
Q  444 ctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacggctaataatttgagaaaat 514  Q
    ||||||||||||||   |||||| |||||  ||||| | ||||||| |||||| |||||||||||||||||||    
T  18069238 ctatgaagcacggatatggacacagacacaagacacaacacggacagtgacaccgctaataatttgagaaaat 18069166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 564
Target Start/End: Original strand, 20873077 - 20873145
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||||||||| |||||  ||||||| ||||||||  || ||||||||||||||||| | |||||||||    
T  20873077 taataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgatacgtgtccg 20873145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 552
Target Start/End: Complemental strand, 31236636 - 31236572
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacac 552  Q
    ||||| |||||||||||||||||||  ||||||||| ||||||   ||||||||||| |||||||    
T  31236636 gacactgctaataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgacggacac 31236572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 547
Target Start/End: Original strand, 9382981 - 9383029
Alignment:
Q  499 aataatttgagaaaattccataattcagtgtaatcatgtgtcggtgtcg 547  Q
    ||||||||||||||| | ||||||||| |||||| ||||||| ||||||    
T  9382981 aataatttgagaaaactacataattcaatgtaattatgtgtctgtgtcg 9383029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 532
Target Start/End: Original strand, 14731706 - 14731754
Alignment:
Q  484 gacactgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||| ||||| |||||||||||||||||||  ||||||| ||||||||    
T  14731706 gacacagacactgctaataatttgagaaaatcacataatttagtgtaat 14731754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 529
Target Start/End: Complemental strand, 18067994 - 18067954
Alignment:
Q  489 tgacacggctaataatttgagaaaattccataattcagtgt 529  Q
    |||||| |||||||||||||||||||  |||||||||||||    
T  18067994 tgacaccgctaataatttgagaaaatcacataattcagtgt 18067954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 495
Target Start/End: Original strand, 22651937 - 22651973
Alignment:
Q  459 ggacacggacaccggacacgatacggacactgacacg 495  Q
    |||||| |||||||||||||| |||||||||||||||    
T  22651937 ggacactgacaccggacacgacacggacactgacacg 22651973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 24413675 - 24413624
Alignment:
Q  444 ctatgaagcacggaa--ggacacggacaccggacacgatacggacactgaca 493  Q
    ||||||||||||||   ||||||||||||| ||||||| |||||||||||||    
T  24413675 ctatgaagcacggatacggacacggacaccagacacgacacggacactgaca 24413624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 495
Target Start/End: Complemental strand, 25192441 - 25192409
Alignment:
Q  463 acggacaccggacacgatacggacactgacacg 495  Q
    ||||||| |||||||||||||||||||||||||    
T  25192441 acggacatcggacacgatacggacactgacacg 25192409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 495
Target Start/End: Complemental strand, 29510421 - 29510366
Alignment:
Q  442 acctatgaagcacggaag--gacacggacaccggacacgatacggacactgacacg 495  Q
    ||||||||||||||||    |||| ||||||||||||||| |||||||||||||||    
T  29510421 acctatgaagcacggatactgacatggacaccggacacgacacggacactgacacg 29510366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 533
Target Start/End: Complemental strand, 30068096 - 30068044
Alignment:
Q  482 cggacactg-acacggctaataatttgagaaaattccataattcagtgtaatc 533  Q
    ||||||||| |||||| |||||||||||||||||  ||||||||||| |||||    
T  30068096 cggacactggacacggataataatttgagaaaatgacataattcagtataatc 30068044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 441 - 564
Target Start/End: Original strand, 8739 - 8874
Alignment:
Q  441 aacctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacg--------gctaataatttgagaaaattccataattcagtgta 530  Q
    ||||||||||||| |||   ||||||||||||||||||||| |||||||||||||||        ||||||||||||| |||||   || ||| ||||||    
T  8739 aacctatgaagcatggatacggacacggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcatattatttagtgta 8838  T
Q  531 at--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||  || ||||||||||||||||| |||||||||||    
T  8839 attacaagtgtcggtgtcggacacgacacgtgtccg 8874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 498 - 564
Target Start/End: Original strand, 70286 - 70354
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaatcat--gtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||||||||| |||||  |||||||||||||||| ||  ||||||||||||||||| |||||||||||    
T  70286 taataatttgaaaaaataacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccg 70354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 92807 - 92849
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  92807 gacaccgctaataatttgagaaaattacataattcagtgtaat 92849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 564
Target Start/End: Complemental strand, 521 - 445
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    ||||| ||||||||||||| |||||  || |||||||||||||  || ||||||||||||||||| || ||||||||    
T  521 gacactgctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacacgacgcgtgtccg 445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 481 - 547
Target Start/End: Original strand, 6303 - 6371
Alignment:
Q  481 acggacactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    |||||||| ||||| ||||||||||||| |||||| ||||||||| ||||||   ||||||||||||||    
T  6303 acggacacggacactgctaataatttgacaaaattgcataattcaatgtaattatatgtgtcggtgtcg 6371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 490 - 559
Target Start/End: Complemental strand, 7091 - 7020
Alignment:
Q  490 gacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgt 559  Q
    ||||| ||||||||||||| |||||| ||||||| ||| ||||  || |||| |||||||||||||||||||    
T  7091 gacacagctaataatttgaaaaaattacataatttagtataattacaagtgtaggtgtcggacacaacacgt 7020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 552
Target Start/End: Original strand, 63774 - 63837
Alignment:
Q  491 acacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacac 552  Q
    |||| |||||||||||||||||||| |||||||||||| |||  || ||||||||||| |||||    
T  63774 acaccgctaataatttgagaaaattacataattcagtgcaattacaagtgtcggtgtcagacac 63837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 495
Target Start/End: Original strand, 9837 - 9895
Alignment:
Q  439 aaaacctatgaagcacggaa--ggacacggacaccggacacgatacggacactgacacg 495  Q
    |||||||||||||||||||   ||||||||||||||||||||| | |||||| ||||||    
T  9837 aaaacctatgaagcacggatacggacacggacaccggacacgacatggacaccgacacg 9895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 495
Target Start/End: Complemental strand, 225365 - 225330
Alignment:
Q  460 gacacggacaccggacacgatacggacactgacacg 495  Q
    |||||||||||||||||||| |||||||||||||||    
T  225365 gacacggacaccggacacgacacggacactgacacg 225330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 531
Target Start/End: Original strand, 1030 - 1076
Alignment:
Q  485 acactgacacggctaataatttgagaaaattccataattcagtgtaa 531  Q
    |||| ||||| ||||||||||||| |||||| |||||||||||||||    
T  1030 acaccgacaccgctaataatttgaaaaaattacataattcagtgtaa 1076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 496
Target Start/End: Original strand, 15016 - 15053
Alignment:
Q  459 ggacacggacaccggacacgatacggacactgacacgg 496  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  15016 ggacacggacaccagacacgacacggacactgacacgg 15053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 532
Target Start/End: Complemental strand, 44610 - 44542
Alignment:
Q  466 gacaccggacacgatacggaca--ctgacacggctaataatttgagaaaattccataattcagtgtaat 532  Q
    |||||| ||||||| | |||||  ||||||| ||||| |||||||||||||  ||||||||||||||||    
T  44610 gacaccagacacgacagggacaagctgacaccgctaaaaatttgagaaaatcacataattcagtgtaat 44542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 564
Target Start/End: Original strand, 90851 - 90919
Alignment:
Q  498 taataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||||||||||||||||   |||||||||||||||   || ||||| |||| |||||||||||||||||    
T  90851 taataatttgagaaaatcatataattcagtgtaattatatatgtcgatgtcagacacaacacgtgtccg 90919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 547
Target Start/End: Complemental strand, 135376 - 135312
Alignment:
Q  485 acactgacacggctaataatttgagaaaattccataattcagtgtaat--catgtgtcggtgtcg 547  Q
    |||| ||||| |||||||||||||||||||  |||||||| |||||||   ||||||||||||||    
T  135376 acaccgacactgctaataatttgagaaaatcacataattctgtgtaattatatgtgtcggtgtcg 135312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 495
Target Start/End: Original strand, 241558 - 241591
Alignment:
Q  462 cacggacaccggacacgatacggacactgacacg 495  Q
    |||||||||||||||||| |||||||||||||||    
T  241558 cacggacaccggacacgacacggacactgacacg 241591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 562
Target Start/End: Complemental strand, 45562 - 45515
Alignment:
Q  517 cataattcagtgtaat--catgtgtcggtgtcggacacaacacgtgtc 562  Q
    ||||||||||||||||  || ||||||||||||||||| |||||||||    
T  45562 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtc 45515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 564
Target Start/End: Original strand, 71784 - 71812
Alignment:
Q  536 gtgtcggtgtcggacacaacacgtgtccg 564  Q
    |||||||||||||||||||||||||||||    
T  71784 gtgtcggtgtcggacacaacacgtgtccg 71812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University