View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11009_low_32 (Length: 212)
Name: NF11009_low_32
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11009_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 12861534 - 12861334
Alignment:
| Q |
1 |
tgtcggcgggaggatcaaggttgcggttagtccattgaacgccgaggccgacaacaagattacagttgcggaggtattgaaggtgatgatcgagcattgt |
100 |
Q |
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| T |
12861534 |
tgtcggcgggaggatcaaggttgcggttagtccattgaacgccgaggccgacaacaagattacagttgcggaggtattgaaggtgatgatcgagcatagt |
12861435 |
T |
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| Q |
101 |
acggagccagtttgttacgacggaagcagtggcggtaacggtgacttcgaagttgatttggctttcatgaatgtagacatggtaagtgcgaaagttttca |
200 |
Q |
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| T |
12861434 |
acggagccagtttgttacaacggaagcagtggcggtaacggtgacttcgaagttgatttggctttcgtgaatgtagacatggtaagtgcgaaggttttca |
12861335 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
12861334 |
t |
12861334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 12844050 - 12844183
Alignment:
| Q |
68 |
gcggaggtattgaaggtgatgatcgagcattgtacggagccagtttgttacgacggaagcagtggcggtaacggtgacttcgaagttgatttggctttca |
167 |
Q |
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| T |
12844050 |
gcggagggattgaaaatgatgattgagcatactttggagccagtttgttacgacggaagctgtggcggtaacggtgacttcgaagttgatttggctttca |
12844149 |
T |
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| Q |
168 |
tgaatgtagacatggtaagtgcgaaagttttcat |
201 |
Q |
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| T |
12844150 |
tgaatgtagacatggtaagtgcgaaggttttcat |
12844183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12843947 - 12844009
Alignment:
| Q |
1 |
tgtcggcgggaggatcaaggttgcggttagtccattgaacgccgaggccgacaacaagattac |
63 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||| |||||||||| ||||||| |
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| T |
12843947 |
tgtcggcgggaggatcaaggttgccgggagtccattgaacgccaaggccgacaatgagattac |
12844009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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