View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11009_low_5 (Length: 531)
Name: NF11009_low_5
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11009_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 153 - 520
Target Start/End: Original strand, 43072192 - 43072559
Alignment:
| Q |
153 |
ctgaaaatgacctaaacaactctaattgcagttaactactattcgctctttttgtggcagcaatcagctgccgttccaaatatacacatgtaaggtnnnn |
252 |
Q |
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| T |
43072192 |
ctgaaaatgacctaaacaactctaactgcagttaactactgttcgctctttt-gcggcagcaattagctgccgttccaaatatacacatgtaaggtaaaa |
43072290 |
T |
|
| Q |
253 |
nnntccaacgacacttaatgccttagagcatgacaattctagaacaaccttttctctctgggtaattgggttaaatgaagaaggatttttccagctatgc |
352 |
Q |
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| T |
43072291 |
aaatccaatgacacttaatgccttagagcatgacaattctagaacaaccttttctctctgggtaattgggttaaatgaagaaggatttttccagctatgc |
43072390 |
T |
|
| Q |
353 |
aggcatgttaatactgattcctttgctaagaaaagccttacatgtaaggtttctgatcctttaagctcttgcttcacattgtcaaatgtttaacttctct |
452 |
Q |
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| T |
43072391 |
aggcatgttaatactgattcctttgctaagaaaagccttacatgtaaggtttctgatcctttaagctcttgcttcacattgtcaaatgtttaacttctct |
43072490 |
T |
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| Q |
453 |
aatcaaatctatggggaatttccacatcggactagtttttc-aacttcaagagcccagtttgttttcat |
520 |
Q |
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| T |
43072491 |
aatcaaatctatggggaatttccacatcggactagtttttcaaacttcaagagcccagtttgttttcat |
43072559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 43072057 - 43072131
Alignment:
| Q |
18 |
acattagagattaaattcatagtttattttttaaattacttttttggtcaaatattaggtccatatgtagatctc |
92 |
Q |
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| T |
43072057 |
acattagagattaaattcatagtttattttttaaattacttttttggtcaaatattaggtccatatgtagatctc |
43072131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 330 - 520
Target Start/End: Original strand, 40299766 - 40299950
Alignment:
| Q |
330 |
aagaaggatttttccagctatgcaggcatgttaatactgattcctttgctaagaaaagccttacatgtaaggtttctgatcctttaagctcttgcttcac |
429 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| |||| |
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| T |
40299766 |
aagaatgatttttccagctacgcaggcatgttaatactgattcctttgctaagaacaaccttacatgtaaggttcatgatcctttaag-------atcac |
40299858 |
T |
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| Q |
430 |
attgtcaaatgtttaacttctctaatcaaatctatggggaatttccacatcggactagtttttcaacttcaa-gagcccagtttgttttcat |
520 |
Q |
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| T |
40299859 |
attgtcatctgtttaacttctctaatcaaacttatggagaatttccacatgggagcagtttttcaacttcaaggagcccaatttgttttcat |
40299950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 348 - 520
Target Start/End: Original strand, 40314329 - 40314503
Alignment:
| Q |
348 |
tatgcaggcatgttaatactgattcctttgctaagaaaagccttacatgtaaggtttctgatcctttaagctcttgcttcacattgtcaaatgtttaact |
447 |
Q |
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| T |
40314329 |
tatgccggcctgttaataatgattcctatgctaagaacaaccttacatataaggtttctgatcctttaaactcttgctccatattgtcatctgtttaact |
40314428 |
T |
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| Q |
448 |
tctctaatcaaatctat-ggggaatttccacatcggactagtttttcaacttcaa-gagcccagtttgttttcat |
520 |
Q |
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| T |
40314429 |
tctttgatcaaatttatgggggaatttccacatgggagtagtttttcaacttcaaggagcccaatttgttttcat |
40314503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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