View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11009_low_6 (Length: 523)
Name: NF11009_low_6
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11009_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 16 - 507
Target Start/End: Original strand, 2022146 - 2022637
Alignment:
| Q |
16 |
gagacatggggtttctttcaaattgttaatcatggtatagaagtgagtgttttagatgagatgaagaatggagtggttagattctttgagcaagattctg |
115 |
Q |
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| T |
2022146 |
gagacatggggtttctttcaaattgttaatcatggtatagaagtgagtgttttagatgagatgaagaatggagtggttagattctttgagcaagattctg |
2022245 |
T |
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| Q |
116 |
aggtgaaaagagaattatacacacgtgatccagtgaagcctttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggatac |
215 |
Q |
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| T |
2022246 |
aggtgaaaagagaattatacacacgtgatccagtgaagcctttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggatac |
2022345 |
T |
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| Q |
216 |
cttttactgttttatggctccgaattctcctaatccagaagatttaccatcagtatgcaggtatgttagatgcaatatttaannnnnnnagattaactat |
315 |
Q |
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| T |
2022346 |
cttttactgttttatggctccgaattctcctaatccagaagatttaccatcagtatgcaggtatgttagatgcaatatttaatttttttagattaactat |
2022445 |
T |
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| Q |
316 |
tgcacaagcatagtgattataggaacaaataagacatcatgattgtgacacgatccttaatattcctgagaattatagtcaaatattgaaaactttgatg |
415 |
Q |
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| T |
2022446 |
tgcacaagcatagtgattataggaacaaataagacatcatgattgtgacacgatccttaatattcctgagaattatagtcaaatattgaaaactttgatg |
2022545 |
T |
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| Q |
416 |
tggtggctaagattgcgggtgattaggattagactattttgatatcatcttgaatttatttgactatatttacaaaattatccctaaattat |
507 |
Q |
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| T |
2022546 |
tggtggccaagattgcgggtgattaggattagactattttgatattatcttgaatttatttgactatatttacaaaattatccctaaattat |
2022637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 2032973 - 2033010
Alignment:
| Q |
160 |
gtttataatagtaattttgatctttatagttcaccagc |
197 |
Q |
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| T |
2032973 |
gtttataatagtaattttgatatttatagctcaccagc |
2033010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 28743446 - 28743247
Alignment:
| Q |
16 |
gagacatggggtttctttcaaattgttaatcatggtatagaagtgagtgttttagatgagatgaagaatggagtggttagattctttgagcaagattctg |
115 |
Q |
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| T |
28743446 |
gagacatggggtttctttcaagtggttaatcatggtattcctataaatgttcttgaggatatgaaagatggagtgattagattctttgaacaagatactg |
28743347 |
T |
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| Q |
116 |
aggtgaaaagagaattatacacacgtgatccagtgaagcctttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggatac |
215 |
Q |
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| T |
28743346 |
aagtgaagaaagagatgtatactagagatcaaacaaggccattggtttataatagtaattttgatttgtatagttcaccagcgcttaattggagggatac |
28743247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 28736820 - 28736621
Alignment:
| Q |
16 |
gagacatggggtttctttcaaattgttaatcatggtatagaagtgagtgttttagatgagatgaagaatggagtggttagattctttgagcaagattctg |
115 |
Q |
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| T |
28736820 |
gagacatggggtttctttcaagtggttaatcatggtattcctataaatgttcttgaggatatgaaagatggagtgattagattctttgaacaagatattg |
28736721 |
T |
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| Q |
116 |
aggtgaaaagagaattatacacacgtgatccagtgaagcctttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggatac |
215 |
Q |
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| T |
28736720 |
aagtgaagaaagagatgtatactagagatcaaacaaggccattggtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatac |
28736621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 28786375 - 28786194
Alignment:
| Q |
16 |
gagacatggggtttctttcaaattgttaatcatggtatagaagtgagtgttttagatgagatgaagaatggagtggttagattctttgagcaagattctg |
115 |
Q |
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||||||||||||||||||||| | || |||||||| || ||| |||| | || || |||| ||||||||| ||||||||||||| |||||| || |
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| T |
28786375 |
gagacatggggtttctttcaagtggtcaatcatggcattcctttgaatgttcttgaggatatgagaaatggagtgattagattctttgaacaagatgttg |
28786276 |
T |
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| Q |
116 |
aggtgaaaagagaattatacacacgtgatccagtgaagcctttggtttataatagtaattttgatctttatagttcaccagc |
197 |
Q |
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| T |
28786275 |
aagtgaaaaaagagttatattctcgtgatccaatgaggccattttcatacaatagcaattttaatctttatagttcatcagc |
28786194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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