View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11009_low_8 (Length: 472)
Name: NF11009_low_8
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11009_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 192 - 458
Target Start/End: Original strand, 28053996 - 28054262
Alignment:
| Q |
192 |
tttatcaaccaaccaatcacaaaacgctgcaatttgcttctgttcatttcgaaactttttaccaagttccgaaaccgcagagttttttgcgagattgtct |
291 |
Q |
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| T |
28053996 |
tttatcaaccaaccaatcacaaaacgctgcaatttgcttctgttcatttcgaaactttttaccaagttccgaaaccgcagagttttttgcgagattgact |
28054095 |
T |
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| Q |
292 |
ttggtaggagtgtttgaacttttcggcaggtcgttttcaatgcaaaaagtcgtatccgtagatttgactggagattttttgttctcgtgatctaatgtac |
391 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28054096 |
ttggtaggagtgtttgaacttttcggcacgtcgttttcagtgcaaaaagtcgtatccgtagatttgactggagattttttcttctcgtgatctaatgtac |
28054195 |
T |
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| Q |
392 |
tactctttgaagattcatcgaaccttttctctggaaattgcctaggaaaaaagtaagttgctctgtg |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28054196 |
tactctttgaagattcatcgaaccttttctctggaaattgcctaggaaaaaagtaagttgctctgtg |
28054262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 28053826 - 28053921
Alignment:
| Q |
16 |
ctatcaacatcaacaacatccttatccggcgaagacaccttcgccgaatccggaagcagaagctcacgatcctcctcgtcgtcttcatgtagaata |
111 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28053826 |
ctatcaacatcaacaacatccttatcaggcgaagacaccttctctgaatccggaagcagaagctcacgatcctcctcgtcctcttcatgtagaata |
28053921 |
T |
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