View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11010_high_3 (Length: 422)
Name: NF11010_high_3
Description: NF11010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11010_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 51729777 - 51730186
Alignment:
| Q |
1 |
ttgaaattcattttctcaattcaattgttgcaactatttttgttgttgaacatgggttttgcttaaattgtattttgacactttcaagtgtctatgtaga |
100 |
Q |
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| T |
51729777 |
ttgaaattcattttctcaattcaattgttgcaactatttttgttgttgaacatgggttttgcttaaattgtattttgacactttcaagtgtctatgtaga |
51729876 |
T |
|
| Q |
101 |
aatttgacaaggataaacacaatgatactatttataagataaatcaaggtgtgtttctatgctagtgaatgagtgccctggtaaaaatattgtgcacaac |
200 |
Q |
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| T |
51729877 |
aattttacaaggataaacacaatgatactatttataagataaatcaaggtgtgtttctatgctagtgaatgagtgccctggtaaaaatattgtgcacaac |
51729976 |
T |
|
| Q |
201 |
attaccatgtatgtgtgttgcggctttaccttatacttttcaatacacnnnnnnnctaaagttcacacccaattttatgcttgatcaatacattattcac |
300 |
Q |
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| T |
51729977 |
attaccatgtatgtgtgttgcggctttaccttatacttttcaatacactttttttctaaagttcacacccaattttatgcttgatcaatacattattcac |
51730076 |
T |
|
| Q |
301 |
ttgctgtgtttatgtgc---agaacatatgtccgcattttgaatcatgtaaagaaaattggtgctcaaagagagtttgtgagtgattattgaattgaaat |
397 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||| |
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| T |
51730077 |
ttgctgtgtttatgtgcagaagaacatatgtccgcattttgaatcatgtaaagaaaattggtgcacatagagagtttgtgagtgattattgaattg-aat |
51730175 |
T |
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| Q |
398 |
ataaggatatt |
408 |
Q |
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| T |
51730176 |
ataaggatatt |
51730186 |
T |
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