View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11010_high_6 (Length: 388)
Name: NF11010_high_6
Description: NF11010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11010_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 15 - 381
Target Start/End: Complemental strand, 41511238 - 41510872
Alignment:
| Q |
15 |
cataaacttccaagacaaacataaacaacagattttggtttatgcaaatctagaaagtttaaacaattatgttcacttattgaagctatgttacctcttt |
114 |
Q |
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| T |
41511238 |
cataaacttccaagacaaacataaacaacagattttggtttatgcaaatctagaaagtttaaacaattatgttcacttattgaagctatgttacctcttt |
41511139 |
T |
|
| Q |
115 |
gagccttatctaaaccatctttgttgcaaagtgcaacaggaccaacacaccaaaccttatcatttcttacctttttgtaatcattaacatattctttctc |
214 |
Q |
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| T |
41511138 |
gagccttatctaaaccatctttgttgcaaagtgcaacaggaccaacacaccaaaccttatcatttcttacctttttgtaatcattaacatattctttctc |
41511039 |
T |
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| Q |
215 |
taactcctcaaaactgtttatgattacaccatatgatttcatttcagcttcttgcattttctcaggaaaccccttcatcttttcctctttcactgttcct |
314 |
Q |
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| T |
41511038 |
taactcctcaaaactgtttatgattacaccatatgatttcatttcagcttcttgcattttctcagcaaaccccttcatcttttcctctttcactgttcct |
41510939 |
T |
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| Q |
315 |
ggtatctgttcttttgtgacttgaattttgtcaggtatgccaggaatagagaaaaactctgtctctg |
381 |
Q |
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| T |
41510938 |
ggtatctgttcttttgtgacttgaattttgtcaggtatgccaggaatagagaaaaactctgtctctg |
41510872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 355
Target Start/End: Complemental strand, 48532592 - 48532255
Alignment:
| Q |
15 |
cataaacttccaagacaaacataaacaacagattttggtttatgcaaatctagaaagtttaaacaattatgttcacttattgaagctatgttacctcttt |
114 |
Q |
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| T |
48532592 |
cataaacttccaagacaagcatacaccacagactttggttggtgcaaatctagccactttaagcaatgatgttcacttattgaggctataatacctcttt |
48532493 |
T |
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| Q |
115 |
gagccttatctaaaccatctttgttgcaaagtgcaacaggaccaacacaccaaaccttatcatttcttacctttttgtaatcattaacatattctttctc |
214 |
Q |
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| T |
48532492 |
gtgccttatccaaaccatctttgttgcaaagtgaaactggtccaacaaaccataccttgccatttttttccttcttgtaatccttaacatatgctttctc |
48532393 |
T |
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| Q |
215 |
taactcctcaaaactgtttatgattacaccatatgatttcatttcagcttcttgcattttctcaggaaaccccttcatcttttcctctttcactgttcct |
314 |
Q |
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| T |
48532392 |
caactcctcaaaagtgtttatgatttcaccatatgacttcatttcagcatcatgcatcttctccccaaactccttca---gttcacctttcaatattcct |
48532296 |
T |
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| Q |
315 |
ggtatctgttcttttgtgacttgaattttgtcaggtatgcc |
355 |
Q |
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| T |
48532295 |
ggtatctgctctttggtgacttgaatttggtcaggtatgcc |
48532255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 242 - 381
Target Start/End: Complemental strand, 41520683 - 41520544
Alignment:
| Q |
242 |
accatatgatttcatttcagcttcttgcattttctcaggaaaccccttcatcttttcctctttcactgttcctggtatctgttcttttgtgacttgaatt |
341 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41520683 |
accatatgatttcatttcagcttcttgcgttttctcagaaaaccccttcatcttttcctctttcactgttcctgttatctgttcttttgtgacttgaatt |
41520584 |
T |
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| Q |
342 |
ttgtcaggtatgccaggaatagagaaaaactctgtctctg |
381 |
Q |
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| T |
41520583 |
ttgtcaggtatgccaggaatagagaaaaactctgtctctg |
41520544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 41536812 - 41536721
Alignment:
| Q |
105 |
ttacctctttgagccttatctaaaccatctttgttgcaaagtgcaacaggaccaacacaccaaaccttatcatttcttacctttttgtaatc |
196 |
Q |
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|||||||||||| ||||||| || ||| |||| | ||||| |||||||||| ||||||||| |||||||||||||||||||| ||||| |
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| T |
41536812 |
ttacctctttgaaccttatccaagtaatcagtgttactaagtgatacaggaccaatacaccaaactttatcatttcttacctttttataatc |
41536721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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