View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11010_low_1 (Length: 607)
Name: NF11010_low_1
Description: NF11010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11010_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 12 - 593
Target Start/End: Original strand, 26017423 - 26018013
Alignment:
| Q |
12 |
gagatgaaagtgatattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaggatcttaatggtggctcttgctgcgtaac |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
26017423 |
gagatgaaagtgatattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaagatcttaatggtggctcttgctgtgtaac |
26017522 |
T |
|
| Q |
112 |
agcatttattaggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcataagtagaggaggtcttgctgaggccttaacatctgatcac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || |||||| |
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| T |
26017523 |
agcatttattaggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcatcagtagaggaggtgttgctgaggccttaacgtcggatcac |
26017622 |
T |
|
| Q |
212 |
aaaccttcgaggaaagacgaaaaggaacggattgaaactcaggtaagtg---------atgatgatgatggcgattttcctgtttgtctttcgtaattga |
302 |
Q |
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| T |
26017623 |
aaaccttcaaggaaagacgaaaaagaacgaattgaaactcaggtaattgattatgataatgatgatgatagcaatttttccgtttgtcgttggtaattga |
26017722 |
T |
|
| Q |
303 |
aacctttgtttgtagtttaggatatcttaaaggtactaaattagttttgaa----nnnnnnnagggaggatatgttgatatgtgccgcggtgtttggaga |
398 |
Q |
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|||| ||||||||||||||| || | |||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
26017723 |
aacc----tttgtagtttaggatctcatgaaggtacttagttagttttgaaatttattttgtagggaggatatgtagatatgtgccgcggtgtttggaga |
26017818 |
T |
|
| Q |
399 |
atccaaggatctcttgctgtttcaaggagcattggtgatggacacatgaaacaatgggtgatagcagagcctgagaccaaagtactcagaattgaacctc |
498 |
Q |
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| T |
26017819 |
atccaaggatctcttgctgtttcaaggagcattggagatagacacatgaaacaatatgtgatagcagaacctgagaccaaagtactcagaattgaacctc |
26017918 |
T |
|
| Q |
499 |
accatgacttgttaatcttagcttcagatggattatgggaaaaggtataggacttcatcaattaattgcaatgttcttttcatgagatcaatttg |
593 |
Q |
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| T |
26017919 |
atcatgactttttaatcttagcttcagatggattatgggaaaaggtataggacttcatcaattaattgcaatgttcttttcatgagatcaatttg |
26018013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 361 - 573
Target Start/End: Original strand, 26003035 - 26003247
Alignment:
| Q |
361 |
agggaggatatgttgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggtgatggacacatgaaacaatgggtgat |
460 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |
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| T |
26003035 |
agggaggatatgtcgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggagatagacacatgaaacaatatgtgat |
26003134 |
T |
|
| Q |
461 |
agcagagcctgagaccaaagtactcagaattgaacctcaccatgacttgttaatcttagcttcagatggattatgggaaaaggtataggacttcatcaat |
560 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
26003135 |
agcagaacctgagaccaaagtactcagaattgaacctcatcatgacttgttaatcttagcttcagatggattatgggaaaaggtataggacttgaccaat |
26003234 |
T |
|
| Q |
561 |
taattgcaatgtt |
573 |
Q |
| |
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||||||| ||||| |
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| T |
26003235 |
taattgcgatgtt |
26003247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 26002611 - 26002856
Alignment:
| Q |
12 |
gagatgaaagtgatattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaggatcttaatggtggctcttgctgcgtaac |
111 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |
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| T |
26002611 |
gagatgagagtgatattgaggaagcagtgaaacatggttacctcaaaacagattcagatttcttaaaagaagatcttaatggtggttcttgctgtgtaac |
26002710 |
T |
|
| Q |
112 |
agcatttattaggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcataagtagaggaggtcttgctgaggccttaacatctgatcac |
211 |
Q |
| |
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|||||| ||||| ||||| ||||||||| |||||||||| || |||||||| |||||||| || |||||| |||||| ||||||||||| |||||| |
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| T |
26002711 |
agcattaattagaaatggcaaccttgttatgtccaatgccggtgattgtcgtgctgtcatcagccatggaggtgctgctgaagccttaacatcagatcac |
26002810 |
T |
|
| Q |
212 |
aaaccttcgaggaaagacgaaaaggaacggattgaaactcaggtaa |
257 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
26002811 |
aaaccttcgaggaaagacgaaaaagaacggattgagactcaggtaa |
26002856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 369 - 545
Target Start/End: Original strand, 30374295 - 30374471
Alignment:
| Q |
369 |
tatgttgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggtgatggacacatgaaacaatgggtgatagcagagc |
468 |
Q |
| |
|
||||||||| | || |||||||||||||| || ||||||||||||||||| ||||| | ||||| || ||||| ||||||||||||||| ||| |||| |
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| T |
30374295 |
tatgttgatttatgtcgcggtgtttggaggattcaaggatctcttgctgtatcaagaggaattggagaccgacacttgaaacaatgggtgacagcggagc |
30374394 |
T |
|
| Q |
469 |
ctgagaccaaagtactcagaattgaacctcaccatgacttgttaatcttagcttcagatggattatgggaaaaggta |
545 |
Q |
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| ||||| ||||| | |||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
30374395 |
ccgagactaaagttattagaattgaacctgaacatgacttgttaatattagcttcagatggattatgggataaggta |
30374471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 30373951 - 30374166
Alignment:
| Q |
22 |
tgatattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaggatcttaatggtggctcttgctgcgtaacagcatttatt |
121 |
Q |
| |
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|||| ||||||| |||||||||| ||||||||||| || ||||| || ||| | ||| | ||||| ||||||| ||||| || || |||||||| ||| |
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| T |
30373951 |
tgatgttgaggaggcagtgaagcgcggttacctcaataccgattctgagttcatgaaaaaagatctacatggtggttcttgttgtgtgacagcattcatt |
30374050 |
T |
|
| Q |
122 |
aggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcataagtagaggaggtcttgctgaggccttaacatctgatcacaaaccttcga |
221 |
Q |
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|||||||||||| | |||||||| ||||| || ||||| || ||||| || ||||||||||| |||||||||| |||||||||||||| ||||| | |
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| T |
30374051 |
aggaatggtaacttagttgtgtctaatgctggtgattgccgtgctgttattagtagaggaggggttgctgaggcactaacatctgatcaccgtccttcaa |
30374150 |
T |
|
| Q |
222 |
ggaaagacgaaaagga |
237 |
Q |
| |
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|| ||||||||||||| |
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|
| T |
30374151 |
gggaagacgaaaagga |
30374166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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