View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11010_low_12 (Length: 256)
Name: NF11010_low_12
Description: NF11010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11010_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 11558646 - 11558860
Alignment:
| Q |
3 |
atggtctttcttgtggaaatccaatgcatgaaattggacacatttcaaatggaccctatcatggcaactgcatttcagttattaaggtatttaccatttc |
102 |
Q |
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| T |
11558646 |
atggtctttcttgtggaaatccaatgcatgaaattgcacacatttcaaatggaccctatcatggcaactgcatttcagttattaaggtatttaccatttc |
11558745 |
T |
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| Q |
103 |
tttaaaatttatgcttcaattgtatatataaaatgatgacaactcttaaaccctagaatttattcggtatagtatacaacatccaatcacttataattaa |
202 |
Q |
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| T |
11558746 |
tttaaaatttatgcttcaattgtgtatataaaatgatgacaactcttaaaccctagagtttattcggtatagtatataacatccaatcacttataattaa |
11558845 |
T |
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| Q |
203 |
ttatattgattccaa |
217 |
Q |
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| T |
11558846 |
ttatattgattccaa |
11558860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 11545182 - 11545345
Alignment:
| Q |
1 |
ggatggtctttcttgtggaaatccaatgcatgaaattggacacatttcaaatggaccctatcatggcaactgcatttcagttattaaggtatttaccatt |
100 |
Q |
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| T |
11545182 |
ggatggtctttcttgtggaaatccaatgcatgaaattgcacacatttcaaatggaccttatcatggcaattgcatttcaattatcaaggtatttaccatt |
11545281 |
T |
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| Q |
101 |
tc-tttaaaatttatgcttcaattgtatatataaaatgatgacaactcttaaaccctagaattt |
163 |
Q |
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| T |
11545282 |
tcttttaaaatttatgcttcaattgtgtatataaaattatgacaactcctatgccctagaattt |
11545345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 11545372 - 11545410
Alignment:
| Q |
159 |
aatttattcggtatagtatacaacatccaatcacttata |
197 |
Q |
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| T |
11545372 |
aatttattcggtatagtatacaacatccaattacttata |
11545410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 12064190 - 12064103
Alignment:
| Q |
1 |
ggatggtctttcttgtggaaatccaatgcatgaaattggacacatttcaaatggaccctatcatggcaactgcatttcagttattaag |
88 |
Q |
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| T |
12064190 |
ggatggtctttcttgtggaaatccaatgcatgaaatcgcacacatttcaaatggaccctatcatggaaactgcatttcaattattaag |
12064103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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