View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11010_low_13 (Length: 250)
Name: NF11010_low_13
Description: NF11010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11010_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 6018405 - 6018644
Alignment:
| Q |
14 |
gaagtgagtgtggtcttcaaatattaatctttcaaatacgcgtattccaactcacatcaccccattacttgcgctatatactaaatattattcaaactac |
113 |
Q |
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| T |
6018405 |
gaagtgagtgtggtcttcaaatattaatctttcaaatacgcgtattccaactcacatcaccccattacttgcgctatatactaaatattattcaaactac |
6018504 |
T |
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| Q |
114 |
aatctag---acttatacttgtatccacgaaaaacaatgtagtgatattatgttccattgaatattactggtgtgactttgtcaaaaacaattctaaatt |
210 |
Q |
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| T |
6018505 |
aatctagtttacttatacttgtatccacgaaaaacaatgtagtgatattatgttccattgaatattattggtgtgactttgtcaaaaacaattctaaatt |
6018604 |
T |
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| Q |
211 |
attcattaatgatacaacatacagtcatacacccatgtta |
250 |
Q |
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| T |
6018605 |
attcattaatgatacaacatacagtcatacacccatgtta |
6018644 |
T |
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