View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11010_low_2 (Length: 562)
Name: NF11010_low_2
Description: NF11010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11010_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Complemental strand, 9453308 - 9452768
Alignment:
| Q |
1 |
ttgtatgaataccttattggcatgagtgtattattttgcagaaaatcttcgatattttcatatattgatgcatgtcttcgtcgatatttatagatcaaca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9453308 |
ttgtatgaataccttattggcatgagtgtattattttgcagaaaatcttcgatattttcatatattgatgcatgtcttcttcgatatttatagatcaaca |
9453209 |
T |
|
| Q |
101 |
acgcagagaaaagtatgatgcccaacataattctaactgtaatccatggcagaacataccttcctgtaaatgctccaacatattcaccgccaatattaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9453208 |
acgcagagaaaagtatgatgcccaacataattctaactgtaatccatggcagaacataccttcctgtaaatgctccaacatattcaccgccaatattaac |
9453109 |
T |
|
| Q |
201 |
ata------attattattcatgcctgctagctcacgaagtcctacaattcatatcaaagtgttggtcataactcatgataaacatctaggctagtgacag |
294 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9453108 |
atagtccgaattattattcatgcctgctagctcacgaagtcctacaattcatatcaaagtgttggtcataactcatgataaacatctaggctagtgacag |
9453009 |
T |
|
| Q |
295 |
aaccataggattatacattcagataaccatattaaacaacatgtaaaattaatgaaaattgttgagaaaattcctagaattattgctttgttaacttagc |
394 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9453008 |
aaccataggattatacattcagataaccatatcaaacaacatgtaaaattaatgaaaattgttgagaaaattcctagaattattgctttgttaacttagc |
9452909 |
T |
|
| Q |
395 |
attttcatactcattgagctgctgttgaaaacttactcaaattgatgttgaaggttcgtcaaaaatcttgatgcgatttgaagaaattgtgtcgtgattt |
494 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9452908 |
attttcatactcattgagctgctgttgaaaagttactcaaattgatgttgaaggttcgtcaaaaatcttgatgcgatttgaagaaattgtgtcgtgattt |
9452809 |
T |
|
| Q |
495 |
tgatccatttattttggaaaatgtgttattttagaccttaa |
535 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
9452808 |
tgatccatttattttggaaaatgtgttattttagaccttaa |
9452768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 214 - 508
Target Start/End: Complemental strand, 9432102 - 9431806
Alignment:
| Q |
214 |
atgcctgctagctcacgaagtcctacaattcatatcaaagtgttggtcataactcatgataaacatctaggctagtgacagaaccataggattatacatt |
313 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
9432102 |
atgcttgctagctcacaaagtcctacaattcatatcaaagatttggtcatgactcatgataaacatctaggctagtggtagaaccataggattatagatt |
9432003 |
T |
|
| Q |
314 |
cagataaccatattaaac-aacatgtaaaattaatgaaaattgttgagaaaattcctagaattattgctttgttaacttagcattttcatactcattgag |
412 |
Q |
| |
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|||||||||| || |||| || |||||||||||||||||||||| | ||||||||||||||||| | ||||||||||||||||||| | ||||||||||| |
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| T |
9432002 |
cagataaccagatgaaactaaaatgtaaaattaatgaaaattgtagcgaaaattcctagaattacttctttgttaacttagcatttacttactcattgag |
9431903 |
T |
|
| Q |
413 |
ctgctgttgaaaacttactc-aaattgatgttgaaggttcgtcaaaaatcttgatgcgatttgaagaaattgtgtcgtgattttgatccatttattt |
508 |
Q |
| |
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||||||||||||| |||||| |||||||||||||||||||||||||| || || ||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
9431902 |
ctgctgttgaaaatttactcaaaattgatgttgaaggttcgtcaaaattcatggtgcgatttggagaaatcgtgtcgtgattttgatccatttattt |
9431806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 9432321 - 9432155
Alignment:
| Q |
1 |
ttgtatgaataccttattggcatgagtgtattattttgcagaaaatcttcgatattttcatatattgatgcatgtcttcgtcgatatttatagatcaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | |
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| T |
9432321 |
ttgtatgaataccttattggcatgagtgtattactttgcagaaaatcttcgatattttcatatattgatgcatgtcttcttcgatatgtatagatcaata |
9432222 |
T |
|
| Q |
101 |
acgcagagaaaagtatgatgcccaacataattctaactgtaatccatggcagaacataccttcctgt |
167 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||| ||||||| |
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|
| T |
9432221 |
acgcagagaaaagtatgatgcccaacataattctaactgcaatgtatggcaaaacatactttcctgt |
9432155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 9485673 - 9485505
Alignment:
| Q |
1 |
ttgtatgaataccttattggcatgagtgtattattttgcagaaaatcttcgatattttcatatattgatgcatgtcttcgtcgatatttatagatcaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
9485673 |
ttgtatgaataccttattggcatgagtgtattgccttgcagaaaatcttcgatattttcatatattgatacatgtcttcttcgatatttatagatcaaca |
9485574 |
T |
|
| Q |
101 |
acgcagagaaaagtatgatgcccaacataattctaactgtaatccatggcagaacataccttcctgtaa |
169 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| ||||| |||||| ||||||||||||||||| |
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|
| T |
9485573 |
acgcagagaaaagtatgattcccaatgtaattctaagtgtaaagtatggcacaacataccttcctgtaa |
9485505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 9400258 - 9400426
Alignment:
| Q |
1 |
ttgtatgaataccttattggcatgagtgtattattttgcagaaaatcttcgatattttcatatattgatgcatgtcttcgtcgatatttatagatcaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||| ||||||||||||| |||||| |||||||||||| |
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| T |
9400258 |
ttgtatgaataccttattggcatgagagtattaccttgcagaaaatcttcaatattttcatatatcgatgcatgtcttctccgatatgtatagatcaaca |
9400357 |
T |
|
| Q |
101 |
acgcagagaaaagtatgatgcccaacataattctaactgtaatccatggcagaacataccttcctgtaa |
169 |
Q |
| |
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| ||||||| |||||||||||| |||| |||| || || |||| ||||||||||||||||||| |
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| T |
9400358 |
gtgtcgagaaaaatatgatgcccaatataactctaggtgcaaggtatggtagaacataccttcctgtaa |
9400426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 8932730 - 8932799
Alignment:
| Q |
1 |
ttgtatgaataccttattggcatgagtgtattattttgcagaaaatcttcgatattttcatatattgatg |
70 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||| ||| |||||||||||||| |||||||| ||||||| |
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|
| T |
8932730 |
ttgtatgaatacctaattggcatgagggaatttccttgaagaaaatcttcgatgttttcatacattgatg |
8932799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 8942647 - 8942736
Alignment:
| Q |
2 |
tgtatgaataccttattggcatgagtgtattattttgcagaaaatcttcgatattttcatatattgatgcatgtcttcgtcgatatttat |
91 |
Q |
| |
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||||||||||||| ||||||||||| | || ||| |||||||||||||| |||||||| ||||||| ||| ||| ||||||||||| |
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| T |
8942647 |
tgtatgaatacctaattggcatgagggagttcccttgaagaaaatcttcgatgttttcatacattgatgtatgccttattcgatatttat |
8942736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 8956652 - 8956721
Alignment:
| Q |
1 |
ttgtatgaataccttattggcatgagtgtattattttgcagaaaatcttcgatattttcatatattgatg |
70 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| ||| |||||||||||||| ||||||| ||||||| |
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|
| T |
8956652 |
ttgtatgaatacctaattggcatgagtgaattcccttgaagaaaatcttcgatgatttcatacattgatg |
8956721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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