View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11010_low_5 (Length: 408)
Name: NF11010_low_5
Description: NF11010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11010_low_5 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 161 - 408
Target Start/End: Complemental strand, 36379133 - 36378883
Alignment:
| Q |
161 |
catttatggattgggagagaagtgtgacacaggaaacttctacgtatacaaatcata-gagcccacatcgactagttcacaagtaaaaataattgtta-- |
257 |
Q |
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| T |
36379133 |
catttatggattgggagagaagtgtgacacaggaaacttctacgtatacaaatcataagagcccacatcgactagttcacaagtaaaaataattgttata |
36379034 |
T |
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| Q |
258 |
gagttataaattaagaggacttcttctacctttaccaaacacagagaagtggagccacgaatgaaatgaaatattgaacttttgggttgaaataaagatg |
357 |
Q |
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| T |
36379033 |
gagttataaattaagaggacttattctacctttaccaaacacagagatgtggagccacgaatgaaatgaaatattgaacttttgggttgaaataaagata |
36378934 |
T |
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| Q |
358 |
aagaggtgatagaaatagacaattcgtaattgtgaaatttattcccatctt |
408 |
Q |
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| T |
36378933 |
aagagttgatagaaatagacaattcgtaattgtgaaatttattcccatctt |
36378883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 36379274 - 36379199
Alignment:
| Q |
19 |
gaggatcttgtaaatatataatagtgataatattccttttaatatcttccattaaacatggaattgagtactgaag |
94 |
Q |
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| T |
36379274 |
gaggatcttgtaaatatataatagtgataatattccttttaatatcttccattaaacatggaattgagtactgaag |
36379199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 403
Target Start/End: Complemental strand, 36368549 - 36368474
Alignment:
| Q |
323 |
atgaaatattgaacttttgggttgaaataaagatgaagaggtgatagaaatagacaattcgtaattgtgaaatttattccc |
403 |
Q |
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| T |
36368549 |
atgaaatattgcacttttgggttgaaacgaagatgaagg-----tagaaatagccaattcgtaattgtgaaatttattccc |
36368474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 36375924 - 36375873
Alignment:
| Q |
196 |
acttctacgtatacaaatcata-gagcccacatcgactagttcacaagtaaa |
246 |
Q |
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| T |
36375924 |
acttctatgtatacaaatcataagaacccacatcgaccagttcacaagtaaa |
36375873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 36383268 - 36383216
Alignment:
| Q |
198 |
ttctacgtatacaaatcata-gagcccacatcgactagttcacaagtaaaaat |
249 |
Q |
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| T |
36383268 |
ttctatgtatacaaatcacaagagcccacatcgaccagttcacaggtaaaaat |
36383216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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