View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11010_low_9 (Length: 297)
Name: NF11010_low_9
Description: NF11010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11010_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 5 - 291
Target Start/End: Complemental strand, 51729683 - 51729397
Alignment:
| Q |
5 |
gacattatttaatttgtcaaactacaattctttcttttgtttcgtaaacatcaacatttacaagtataagtaattaattgctttgtcnnnnnnntataac |
104 |
Q |
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| T |
51729683 |
gacattatttaatttgtcaaactacaattctttcttttgtttcgtaaacatcaacatttacaagtataagtaattaattgctttgttaaaaaaatataac |
51729584 |
T |
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| Q |
105 |
tagtgctgactttgtttttgaaggaattgaaggaaaaccatgcaccatgttgataaggactttgcattggacagttccacattattggatatggggtttg |
204 |
Q |
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| T |
51729583 |
tagtgctgactttgtttttgaaggaattgaaggaaaaccatgcaccatgttgataaggactttgcattggacagttccacattattggatatggggtttg |
51729484 |
T |
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| Q |
205 |
ccatttttcttgttctactcaacaagattttctcagttactccatgaaagaccaaaccaaggcctactcaaagctcttctctgcttc |
291 |
Q |
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| T |
51729483 |
ccatttttcttgttctattcaacaagattttctcagttactccatgaaagaccaaaccaaggcctactcaaagctcttctctgcttc |
51729397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 19055897 - 19055989
Alignment:
| Q |
140 |
aaccatgcaccatgttgataaggactttgcattggacagttccacattattggatatggggtttgccatttttcttgttctactcaacaagat |
232 |
Q |
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| T |
19055897 |
aaccatgcacaatgatcataaggagtttgcattggacacttccacattataggatgtggggaataccatttttcatgttctatgcaacaagat |
19055989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 19189302 - 19189210
Alignment:
| Q |
140 |
aaccatgcaccatgttgataaggactttgcattggacagttccacattattggatatggggtttgccatttttcttgttctactcaacaagat |
232 |
Q |
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| T |
19189302 |
aaccatgcacaatggtcataaggagtttgcattggacacttccacattataggatgtggggaataccatttttcatgttctatgcaacaagat |
19189210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 260
Target Start/End: Complemental strand, 6897257 - 6897120
Alignment:
| Q |
123 |
tgaaggaattgaaggaaaaccatgcaccatgttgataaggactttgcattggacagttccacattattggatatggggtttgccatttttcttgttctac |
222 |
Q |
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||||||| |||||| ||||||||||||||| | | || | |||||||||| | |||| |||| |||||| ||||| | ||||||||| |||||||| |
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| T |
6897257 |
tgaaggacctgaagggaaaccatgcaccatgatagtcagaagattgcattggatacttccccatttttggatttggggagtaccatttttcatgttctac |
6897158 |
T |
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| Q |
223 |
tcaacaagattttctcagttactccatgaaagaccaaa |
260 |
Q |
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| T |
6897157 |
tcaacaagatctgcacagttcctccatcaaacaccaaa |
6897120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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