View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11011_high_1 (Length: 817)
Name: NF11011_high_1
Description: NF11011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11011_high_1 |
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| [»] scaffold1064 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 748; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 14 - 801
Target Start/End: Complemental strand, 26825536 - 26824749
Alignment:
| Q |
14 |
agactggtaaagtggttaatggaacgatgttggggttcatgaaaataatttggaagatggatgtgataatctctaaaaatgatttgaagctatcagtatg |
113 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26825536 |
agactggtaaggtggttaatggaacgatgttggggttcatgaaaataatttggaagatggatgtgataatctctaaaaatgatttgaagctatcagccag |
26825437 |
T |
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| Q |
114 |
gactactgatctcttagatgattttccaccaatttcattagaagatcctcttgtagtaattgcagagtacattgctgcatactacaaggagactggagtt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26825436 |
gactactgatctcttagatgattttccaccaatttcattagaagatcctcttgtagtaattgcagagtacattgctgcatactacaaggagactggagtt |
26825337 |
T |
|
| Q |
214 |
cccattaagcgggatcagattccagacaagataggtgagccgctatagccgaaggaagaggaaagcaacttctgaggaggtaaaagatatacctcagaag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26825336 |
cccattaagcgggatcagattccagacaagataggtgagccgctatagccgaaggaagaggaaagcaacttctgaggaggtaaaagatatacctcagaag |
26825237 |
T |
|
| Q |
314 |
ccaccaaaggtggtcaaaactatcaaaattgttgcttctggtgtacataaggaagtagcagaactggacacttcataaattcttcccactagaactagag |
413 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26825236 |
ccaccaaagaaggtcaaaactatcaaaattgttgcttctggtgtacataaggaagtagcagaactggacacttcataaattcttcccaccagaactagag |
26825137 |
T |
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| Q |
414 |
gtggtgctactataagagcctcacctgcacagttagagaagaaaccagtcaagcaagcaagaaggccagctaggaagttggtgatgtccaaatatgttga |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26825136 |
gtggtgctactataagagcctcacctgcacagttagagaagaaaccagtcaagcaagcaagaaggccagctaggaagttggtgatgtccaaatatgttga |
26825037 |
T |
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| Q |
514 |
ggaagaagtaattgaagaagaagcttcaagtctcatctctagataagatagagcaaagtaagctaaagctaacaagcaggtcctagagctatcctcagga |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26825036 |
ggaagaagtaattgaagaagaagcttcaagtctcatctctagataagatagagcaaagcaagctaaagctaacaagcaggtcctagagctatcctcagga |
26824937 |
T |
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| Q |
614 |
ttagaagttgatgctttaactcaagctgcactgagtctaaaggatcttgttcatgaagatcccaaggaagatgtatccagaaagcaaactgaggacaggg |
713 |
Q |
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| T |
26824936 |
ttagaagttgatggtttaactcaagctgcactgagtctaaaggatcttgttcatgaagatcccaaggaagatgtatccagaaagcaaactgaggacaggg |
26824837 |
T |
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| Q |
714 |
agcaagttaggaagctgcctccagacttacaaggaaaagatgttgtagaaagctcaaagttagtggcatctctgatgaaggtcaataa |
801 |
Q |
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| T |
26824836 |
agcaagttaggaagctgcctccagacttacaaggaaaagatgttgtagaaagctcagagttagtggcatctctgatgaaggtcaataa |
26824749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 2685 - 2599
Alignment:
| Q |
165 |
tgtagtaattgcagagtacattgctgcatactacaaggagactggagttcccattaagcgggatcagattccagacaagataggtga |
251 |
Q |
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|||||||||||||||||| ||||||||||||||||| || ||| ||||| |||| |||||||||||| |||||||||||||| |
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| T |
2685 |
tgtagtaattgcagagtatattgctgcatactacaaagaaactagagttttgattagttaggatcagattcctgacaagataggtga |
2599 |
T |
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