View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11011_high_10 (Length: 273)

Name: NF11011_high_10
Description: NF11011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11011_high_10
NF11011_high_10
[»] chr5 (2 HSPs)
chr5 (113-273)||(30274897-30275057)
chr5 (20-60)||(30275152-30275192)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 113 - 273
Target Start/End: Complemental strand, 30275057 - 30274897
Alignment:
Q  113 ttggttcaattattaattatgtgactcatcttataaagattttctaggtggtgcgtaatatatgctacaacattgtaaagtccaaactcaactcatataa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30275057 ttggttcaattattaattatgtgactcatcttataaagattttctaggtggtgcgtaatatatgctacaacattgtaaagtccaaactcaactcatataa 30274958  T
Q  213 aatgtaattttattnnnnnnntatgtggtgacatagtaactttgaaagaatattattgtcc 273  Q
    ||||||||||||||       ||||||||||||||||||| ||||||||||||||||||||    
T  30274957 aatgtaattttattaaaaaaatatgtggtgacatagtaacattgaaagaatattattgtcc 30274897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 30275192 - 30275152
Alignment:
Q  20 caaaagattaaaaggagttaaataattgtagaactatattc 60  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30275192 caaaagattaaaaggagttaaataattgtagaactatattc 30275152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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