View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11011_high_11 (Length: 249)
Name: NF11011_high_11
Description: NF11011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11011_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 100 - 239
Target Start/End: Original strand, 12105380 - 12105519
Alignment:
| Q |
100 |
aacatacaagtatgtatcaatttatttcttttgtattattaacagcacatagaaggaagtttttggggggatggatactttggagaatatgagaatgaaa |
199 |
Q |
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| T |
12105380 |
aacatacaagtatgtatcaatttatttcttttgtattattaacagcacataaaaggaagtttttgggaggatggatactttggagaatatgagaatgaaa |
12105479 |
T |
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| Q |
200 |
agtggtcccatccaaaatctgttccaggttgcctttcatc |
239 |
Q |
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| T |
12105480 |
agtggtcccatccaaaatctgttccaggttgcctttcatc |
12105519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 12105296 - 12105352
Alignment:
| Q |
17 |
aaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgatttaa |
73 |
Q |
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| T |
12105296 |
aaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgatttaa |
12105352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 1459362 - 1459312
Alignment:
| Q |
21 |
tcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgattt |
71 |
Q |
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| T |
1459362 |
tcttgaactttatcaggtttgtttcttaattttaacaattatatttgattt |
1459312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 1446037 - 1445999
Alignment:
| Q |
33 |
tcaggtttgtttcttaaatttaacaatcatatttgattt |
71 |
Q |
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| T |
1446037 |
tcaggtttgtttcttaattttaacaatcgtatttgattt |
1445999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 965508 - 965454
Alignment:
| Q |
17 |
aaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgattt |
71 |
Q |
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|||||||||| |||| |||||||||||| |||||||||||||||||||| ||||| |
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| T |
965508 |
aaaatcttgaactttatcaggtttgtttgttaaatttaacaatcatattcgattt |
965454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 410277 - 410332
Alignment:
| Q |
17 |
aaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgattta |
72 |
Q |
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|||||||||| |||| || ||||||||| |||||||||| |||||||||||||||| |
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| T |
410277 |
aaaatcttgaactttatcgggtttgtttgttaaatttaagaatcatatttgattta |
410332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 974054 - 974016
Alignment:
| Q |
17 |
aaaatcttgacctttttcaggtttgtttcttaaatttaa |
55 |
Q |
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|
| T |
974054 |
aaaatcttgacctttatcaggtttgtttgttaaatttaa |
974016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 10116790 - 10116745
Alignment:
| Q |
17 |
aaaatcttgacctttttcaggtttgtttcttaaatttaacaatcat |
62 |
Q |
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| T |
10116790 |
aaaatcttgaactttatcaggtttgtttgttaaatttaacaatcat |
10116745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 45810521 - 45810474
Alignment:
| Q |
25 |
gacctttttcaggtttgtttcttaaatttaacaatcatatttgattta |
72 |
Q |
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||||||| ||||||||| || ||||||||||| ||||||||||||||| |
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| T |
45810521 |
gacctttatcaggtttgcttgttaaatttaacgatcatatttgattta |
45810474 |
T |
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