View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11011_high_4 (Length: 401)
Name: NF11011_high_4
Description: NF11011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11011_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 23378009 - 23378385
Alignment:
| Q |
18 |
atcattctacaatcattatgaagtaataaaaaataaagaaggttggggatgagagttttgtcgaatcaagtctttcattataaccaagagtagcaagaca |
117 |
Q |
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| T |
23378009 |
atcattctacaatcattatgaagtaataaaaa-taaagaaggttggggatgagagttttgtcgaatcaagtctgtcattataaccaagagtaacaagaca |
23378107 |
T |
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| Q |
118 |
ttaagcacattgattgacttctcaatgaacataaac-atctcacaatccaattatgttcacccataagagtcaccaaatcctcatgcacattttttcagt |
216 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23378108 |
ttaagcacattgattgacttctcaatgaatatgtttgatctcacaatccaattatgttcacccataagagtcaccaaatcctcatgcacattttttcagt |
23378207 |
T |
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| Q |
217 |
cctcactcttaaatcaccttaaaaccctaaattcaagtgaccaaatggggttatagtgtaggtctggagtacggagacaatcaatatactgacacatgtg |
316 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
23378208 |
cctcgctcttaaatcacctcaaaaccctaaattcaagtgaccaaatgggcttatagtgtaggtctggagtacgaacacaatcaatatactgacacatgtg |
23378307 |
T |
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| Q |
317 |
gtaggtcatacgttataatcaatcgattttagaaacctccatataaatcgctacagttttaacgcaatccattttacg |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23378308 |
gtaggtcatacgttataatcaatcgattttagaaacctccatataaatcgctacagttttaacgcagtccattttacg |
23378385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 23377478 - 23377538
Alignment:
| Q |
341 |
gattttagaaacctccatataaatcgctacagttttaacgcaatccattttacggatgaat |
401 |
Q |
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|||||||||||||||| ||| |||| || || ||||||||||||||||||||| ||||||| |
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| T |
23377478 |
gattttagaaacctccttatcaatcactgcaattttaacgcaatccattttacagatgaat |
23377538 |
T |
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