View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11011_low_10 (Length: 302)
Name: NF11011_low_10
Description: NF11011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11011_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 30274794 - 30274508
Alignment:
| Q |
1 |
accaacatggtgactgctttttggcacaccaacggttagccatagttgatcctgcttctggggatcaacctctctttaatgaagacaaatctgtcattgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30274794 |
accaacatggtgactgctttttggcacaccaacggttagccatagttgatcctgcttctggggatcaacctctctttaatgaagacaaatctgtcattgt |
30274695 |
T |
|
| Q |
101 |
cacggtaggccatttatatgacatatgctaaatcaattacaacacatgtagcatcgacgttttatattgaaggcgtgagtgtcagacaacaacagtatag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30274694 |
cacggtaggccatttatatgacatatgctaaatcaattacaacacatgtagcatcgacgctttatattgaaggcgtgagtgtcagacaacaacagtatag |
30274595 |
T |
|
| Q |
201 |
atacaacgctaacacatgtgataatatgcagtcatttttatgttatcactgatatttacgtgtcagtgtcattgtcgtatctgatgt |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
30274594 |
atacaacgctaacacatgtgataatatgcagtcatttttatgttatcattgatatttacgtgtcagtgtcattgtcgtatctaatgt |
30274508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 25967447 - 25967341
Alignment:
| Q |
1 |
accaacatggtgactgctttttggcacaccaacggttagccatagttgatcctgcttctggggatcaacctctctttaatgaagacaaatctgtcattgt |
100 |
Q |
| |
|
||||||||||||| || |||||| || ||| |||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||| | ||||| |
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| T |
25967447 |
accaacatggtgataactatttggctcatcaaaggttagccattgttgatcctgcttctggtgatcaacctctcttcaatgaagataaatcaattattgt |
25967348 |
T |
|
| Q |
101 |
cacggta |
107 |
Q |
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||||||| |
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| T |
25967347 |
cacggta |
25967341 |
T |
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