View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11011_low_12 (Length: 297)

Name: NF11011_low_12
Description: NF11011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11011_low_12
NF11011_low_12
[»] chr1 (1 HSPs)
chr1 (1-297)||(13244812-13245108)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 13245108 - 13244812
Alignment:
Q  1 aggcgtaacaactaattaaatatatcacgtaacaaatacacaattccaaacattgaggattttattcgtttgttgtaacacagagagcaacacaaatagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13245108 aggcgtaacaactaattaaatatatcacgtaacaaatacacaattccaaacattgaggattttattcgtttgttgtaacacacagagcaacacaaatagt 13245009  T
Q  101 ataatttgacaaatgacaataacattattttactaggacagacacagcaacaaaaaggttaacaacacagacacaacatgcatcacacttacaactttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13245008 ataatttgacaaatgacaataacattattttactaggacagacacagcaacaaaaaggttaacaacacagacacaacatgcatcacacttacaactttgt 13244909  T
Q  201 tatatcaaatgcatcttttactgacttcgacctttaagccgtgcttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttccaccac 297  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244908 tatatcaaatgcatcttttactgacttcgacctttaagccgtgtttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttccaccac 13244812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University