View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11011_low_13 (Length: 273)

Name: NF11011_low_13
Description: NF11011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11011_low_13
NF11011_low_13
[»] chr5 (2 HSPs)
chr5 (113-273)||(30274897-30275057)
chr5 (20-60)||(30275152-30275192)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 113 - 273
Target Start/End: Complemental strand, 30275057 - 30274897
Alignment:
Q  113 ttggttcaattattaattatgtgactcatcttataaagattttctaggtggtgcgtaatatatgctacaacattgtaaagtccaaactcaactcatataa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30275057 ttggttcaattattaattatgtgactcatcttataaagattttctaggtggtgcgtaatatatgctacaacattgtaaagtccaaactcaactcatataa 30274958  T
Q  213 aatgtaattttattnnnnnnntatgtggtgacatagtaactttgaaagaatattattgtcc 273  Q
    ||||||||||||||       ||||||||||||||||||| ||||||||||||||||||||    
T  30274957 aatgtaattttattaaaaaaatatgtggtgacatagtaacattgaaagaatattattgtcc 30274897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 30275192 - 30275152
Alignment:
Q  20 caaaagattaaaaggagttaaataattgtagaactatattc 60  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30275192 caaaagattaaaaggagttaaataattgtagaactatattc 30275152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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