View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11011_low_15 (Length: 241)
Name: NF11011_low_15
Description: NF11011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11011_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 47763675 - 47763469
Alignment:
| Q |
1 |
tcagaaatctctcaaagaagttcatcgcatttgcgattccatcgtttctccttgcaaatctgccagaaactttgagcagtggcaacaagattattttgan |
100 |
Q |
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| T |
47763675 |
tcagaaatctctcaaagaagttcatcgcatttgcgattccatcgtttctccttgcaaatccgccagaaactttgagcagcggcaacaagattattttgat |
47763576 |
T |
|
| Q |
101 |
nnnnnnnnnnngcttggaaaatcatatttgttctcatttggtaatgtttttagtttgtatttgttgttaattttagcgtacttatatgacacattttgct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47763575 |
tttgttttttcgcttggaaaatcatatttgttctcatttggtaatgtttttagtttgtatttgttgttaattttagcgtacttatatgacacattttgct |
47763476 |
T |
|
| Q |
201 |
tcatcaa |
207 |
Q |
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||||||| |
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| T |
47763475 |
tcatcaa |
47763469 |
T |
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