View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11011_low_2 (Length: 633)
Name: NF11011_low_2
Description: NF11011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11011_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 91 - 611
Target Start/End: Original strand, 46816576 - 46817101
Alignment:
| Q |
91 |
ttaagaagctcttagcagtatgaaaagtttaaacatgtataagcttgtattataatagaatagtgtaatgctaataaccttgaggactaggggttggaat |
190 |
Q |
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| T |
46816576 |
ttaagaagctcttagcagtatgaaaagtttaaacatgtataagcttgtattataatagaatagtgtaatgctaataaccttgaggactaggggttggaat |
46816675 |
T |
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| Q |
191 |
aaatcctgagggagaagatgcaggtgaatgagatggtcctagagccactggacctgtgaatatacatcaaaatcattataaagattaattcaaacgaaaa |
290 |
Q |
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| T |
46816676 |
aaatcctgagggagaagatgcaggtgaatgagatggtcctagagccactggacctgtgaatatacatcaaaatcattataaagattaattcaaacgaaaa |
46816775 |
T |
|
| Q |
291 |
atagtttagaggaattaaacctacaatgttactagatgatagatcatgctagtttcatttcttatttagcatgattcgatttctaagtaagaaatggaat |
390 |
Q |
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| T |
46816776 |
atagtttagaggaattaaacctacaatgttactagatgatagatcatgctagtttcatttcttatttagcatgattcgatttctaagtaagaaatggaat |
46816875 |
T |
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| Q |
391 |
tcacatttgttagaaaatatttttgttaggcattttagaagggtttatgtaagaatttgtgtacaaaaatggttgaaattgaaatttggcattaccagga |
490 |
Q |
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| T |
46816876 |
tcacatttgttagaaaatatttttgttaggcattttagaagggtttatgtaagaatttgtgtacaaaaatgattgaaattgaaatttggcattaccagga |
46816975 |
T |
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| Q |
491 |
gcaggaagtggtgaagctgaggctgcagagtaataaaaagtaacatattagctttattattgag-----aataacaaaatttactctacaaagttacata |
585 |
Q |
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| T |
46816976 |
gcaggaagtggtgaagctgaggctgcaaagtaatgaaaagtaacatattagctttattattgagaataaaataacaaaatttactctacaaagttacata |
46817075 |
T |
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| Q |
586 |
caaacacaagaaaaagatttaagtag |
611 |
Q |
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| T |
46817076 |
caaacacaagaaaaagatttaagtag |
46817101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 46816515 - 46816571
Alignment:
| Q |
1 |
agctggtaggtcagaagatgctgctcaaagaaaaatgtacaagagttggatgttagtaa |
59 |
Q |
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| T |
46816515 |
agctggtaggtcagaagatgctgctcaaagaaaaatgt--aagagttggatgttagtaa |
46816571 |
T |
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