View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11011_low_3 (Length: 521)
Name: NF11011_low_3
Description: NF11011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11011_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 10566535 - 10567053
Alignment:
| Q |
1 |
acaactgtagacaatgtttctgttctgttttgaattgcagtctcggaaacaaatcttgattctggaaaccaggacatatcaagtgatttatgtgtgttgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10566535 |
acaactgtagacaatgtttctgttctgttttgaattgcagtctcggaaacaaatcttgattctggaaaccaggacatatcaagtgatttatatgtgttgt |
10566634 |
T |
|
| Q |
101 |
ttaagcatgcatcattatttgtttctaaatatttatactgttccacctctgaatcttccaaaccagaatgcagtagctcaccaaaagacgtactggcata |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10566635 |
ttaagcatgtatcattatttgtttctaaatatttatactgttccacctctgaatcttccaaaccagaatgcagtagctcaccaaaagacgtactggcata |
10566734 |
T |
|
| Q |
201 |
gctttgattcaatagaaagttaaaagaagaatcagcattgccttcaaggaactgtctcttgtaagcttcgtcatgaacgtctacagaatgtctattattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10566735 |
gctttgattcaatagaaagttaaaagaagaatcagcattgccttcaaggaactgtctcttgtaagcttcgtcatgaacatctacagaatgtctattattt |
10566834 |
T |
|
| Q |
301 |
gaatccttatccatagcatcagtggacatcactacaaatttactttggtccttttgccaagaggatgttactgagggtccagaacaactatataactcag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10566835 |
gaatccttatccatagcatcagtggacatcactacaaatttactttggtccttttgccaagaggatgttactgagggtccagaacaactatataactcag |
10566934 |
T |
|
| Q |
401 |
agatagcactatattgactttcaaactcaccacggtctggaatagatctaatcgtcttcatgaactctaaataatcagtccccatacatggaacctccga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10566935 |
agatagcactatattgactttcaaactcaccacggtctggaatagatctaatcgtcttcatgaactctaaataatcagtccccatacatggaacctccga |
10567034 |
T |
|
| Q |
501 |
gttgatgtccatctcattg |
519 |
Q |
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|||| | ||| |||||||| |
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| T |
10567035 |
gttgttttccttctcattg |
10567053 |
T |
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