View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11011_low_4 (Length: 444)
Name: NF11011_low_4
Description: NF11011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11011_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 41916822 - 41917251
Alignment:
| Q |
1 |
gatattgagttagggaactcttgtcatcctatggttcttgttcaaatacctatgtacaatgaaagagaggtactttattttttattctaaaaaatgcaac |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41916822 |
gatattgagttagggaactcttgttatcctatggttcttgttcaaatacctatgtacaatgaaagagaggtactttattttttattctaaaaaatgcaac |
41916921 |
T |
|
| Q |
101 |
tttgttaagcatagtagttgagcacnnnnnnnaaggcttgatattgagttttcttttaatgtatgtatgtaggtttatcaattgtcaattggagctgcat |
200 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41916922 |
tttgttaagcatagtagttgagcactttttttaaagcttgatattgagttttcttttaatgtatgtatgtaggtttatcaattgtcaattggagctgcat |
41917021 |
T |
|
| Q |
201 |
gtggtctttcatggccttctgataggatcattatacaagttcttgatgactccactgacccaacaatcaaggtaaccactgaatttaaattattaaatcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41917022 |
gtggtctttcatggccttctgataggatcattatacaagttcttgatgactccactgacccaacaatcaaggtaaccactgaatttaaattattaaatcc |
41917121 |
T |
|
| Q |
301 |
aagatttttaattcactctacgtcgcgattcttaatattgcaaaaatatcataatcatttacaatttatatcgactcaattgcgatgtcttttagtcaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41917122 |
aagatttttaattcactctacgtcgcgattcttaatattgcaaaaatatcataatcatttacaatttatatcgactcaattgcgatgtcttttagtcaca |
41917221 |
T |
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| Q |
401 |
aactcgcataacctaaaaaacattgatgtc |
430 |
Q |
| |
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||||| |||||||||||| ||||||||||| |
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| T |
41917222 |
aactcacataacctaaaatacattgatgtc |
41917251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 26823423 - 26823320
Alignment:
| Q |
171 |
aggtttatcaattgtcaattggagctgcatgtggtctttcatggccttctgataggatcattatacaagttcttgatgactccactgacccaacaatcaa |
270 |
Q |
| |
|
|||||||||| || |||||||| |||||||||| || || |||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||| |
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| T |
26823423 |
aggtttatcagttatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactgacccaacaatcaa |
26823324 |
T |
|
| Q |
271 |
ggta |
274 |
Q |
| |
|
|||| |
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|
| T |
26823323 |
ggta |
26823320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 167 - 274
Target Start/End: Complemental strand, 26786554 - 26786447
Alignment:
| Q |
167 |
atgtaggtttatcaattgtcaattggagctgcatgtggtctttcatggccttctgataggatcattatacaagttcttgatgactccactgacccaacaa |
266 |
Q |
| |
|
|||||||||||||| | |||||||| |||||||||| || || |||||||||||||| ||||| |||||| |||||||||| || ||||||||||||| |
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| T |
26786554 |
atgtaggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattcaactgacccaacaa |
26786455 |
T |
|
| Q |
267 |
tcaaggta |
274 |
Q |
| |
|
|||||||| |
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|
| T |
26786454 |
tcaaggta |
26786447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 26833338 - 26833235
Alignment:
| Q |
171 |
aggtttatcaattgtcaattggagctgcatgtggtctttcatggccttctgataggatcattatacaagttcttgatgactccactgacccaacaatcaa |
270 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||| || ||||||||||||||||||||||| |||||| |||||||||| || ||||| || ||||| || |
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| T |
26833338 |
aggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcctacaattaa |
26833239 |
T |
|
| Q |
271 |
ggta |
274 |
Q |
| |
|
|||| |
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|
| T |
26833238 |
ggta |
26833235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 26799332 - 26799229
Alignment:
| Q |
171 |
aggtttatcaattgtcaattggagctgcatgtggtctttcatggccttctgataggatcattatacaagttcttgatgactccactgacccaacaatcaa |
270 |
Q |
| |
|
|||||||||| | |||||||| |||||||||| || || |||||||||||||| ||||| |||||| |||||||||| |||||||||||||| ||||| |
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| T |
26799332 |
aggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactgacccaaccatcaa |
26799233 |
T |
|
| Q |
271 |
ggta |
274 |
Q |
| |
|
|||| |
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|
| T |
26799232 |
ggta |
26799229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 41545966 - 41546050
Alignment:
| Q |
168 |
tgtaggtttatcaattgtcaattggagctgcatgtggtctttcatggccttctgataggatcattatacaagttcttgatgactc |
252 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| | |||||||| |||||||| || ||||| ||||||||||||||||| |
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| T |
41545966 |
tgtaggtgtatcaattatcaattggagctgcatgtgggttatcatggccatctgatagaattattattcaagttcttgatgactc |
41546050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 26786694 - 26786651
Alignment:
| Q |
28 |
cctatggttcttgttcaaatacctatgtacaatgaaagagaggt |
71 |
Q |
| |
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||||| |||||||||||||| || |||||||||||||||||||| |
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| T |
26786694 |
cctattgttcttgttcaaatcccaatgtacaatgaaagagaggt |
26786651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 26799493 - 26799427
Alignment:
| Q |
5 |
ttgagttagggaactcttgtcatcctatggttcttgttcaaatacctatgtacaatgaaagagaggt |
71 |
Q |
| |
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||||||| || |||||| | |||| ||||||||||||||| | || |||||||||||||||||||| |
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|
| T |
26799493 |
ttgagttgggaaactctaattatcccatggttcttgttcaagttccaatgtacaatgaaagagaggt |
26799427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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