View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11011_low_7 (Length: 383)
Name: NF11011_low_7
Description: NF11011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11011_low_7 |
 | |
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| [»] scaffold0106 (1 HSPs) |
| | |
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| [»] scaffold0437 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 4 - 367
Target Start/End: Complemental strand, 20851307 - 20850944
Alignment:
| Q |
4 |
ggagaagcatagggtggtggtcagattgtgttctcagtagggccgtacaggaagtaccaccccaacaatccagccaagcttcattacaaatggcacgatc |
103 |
Q |
| |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20851307 |
ggagcagcaaagggtggtggtcagattgtgttctcagtagggccgtacaggaagtgccaccccaacaatccagccaagcttcattacaaatggcacggtc |
20851208 |
T |
|
| Q |
104 |
gagacgcnnnnnnnctgaatctgtatctaagcggccgttgttccaagtatattgcacaccacttgtattgagatgaagtaacagattggcattagaccaa |
203 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
20851207 |
gagacgcaaaaaaactgaatctgtatctaagcggccgttgttccaagtatattgtacaccgtttgtattcagatgaagtaacagattggcattagaccaa |
20851108 |
T |
|
| Q |
204 |
gaaagaaagtcattacaagataaagattgaggaagacgtctgcccctcttctcatgagcccctagaaccgcattaaaatccccaacaaatatccaaggag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
20851107 |
gaaagaaagtcattacaagataaagattgaggcagacgtcgacccctcttctcatgagcccctagaaccgcattaaaatccccaacaaagatccaaggag |
20851008 |
T |
|
| Q |
304 |
ctataaaattattttgcaacatagttagatcagcccataattgtctgcgtaaaatatatgatgt |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
20851007 |
ctataaaattattttgcaacatagttagatcagcccataattgtctgcgtaaaagatatgatgt |
20850944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 340
Target Start/End: Complemental strand, 26694343 - 26694131
Alignment:
| Q |
128 |
atctaagcggccgttgttccaagtatattgcacaccacttgtattgagatgaagtaacagattggcattagaccaagaaagaaagtcattacaagataaa |
227 |
Q |
| |
|
|||||| | ||| |||||||||||| |||| || ||| ||||||| ||||| | ||| | ||||||||| ||||||| |||||| || ||||||| | | |
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|
| T |
26694343 |
atctaacctgccattgttccaagtaaattgtaccccatttgtattcagatgtaataataaattggcattggaccaagcaagaaaatccgtacaagaaata |
26694244 |
T |
|
| Q |
228 |
gattgaggaagacgtctgcccctcttctcatgagcccctagaaccgcattaaaatccccaacaaatatccaaggagctataaaattattttgcaacatag |
327 |
Q |
| |
|
|| |||| ||||| | ||||| ||||||||||| || | || |||||||||||||| ||||| ||||| ||||| | ||||||| || | ||| | |
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|
| T |
26694243 |
gagggagggagacgacgtccccttttctcatgagcacccaagacggcattaaaatcccccacaaaaatccacggagcgacgtaattattctggagcattg |
26694144 |
T |
|
| Q |
328 |
ttagatcagccca |
340 |
Q |
| |
|
||||||||||||| |
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|
| T |
26694143 |
ttagatcagccca |
26694131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 340
Target Start/End: Complemental strand, 26964075 - 26963863
Alignment:
| Q |
128 |
atctaagcggccgttgttccaagtatattgcacaccacttgtattgagatgaagtaacagattggcattagaccaagaaagaaagtcattacaagataaa |
227 |
Q |
| |
|
|||||| | ||| |||||||||||| |||| || ||| ||||||| ||||| | ||| | ||||||||| ||||||| |||||| || ||||||| | | |
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|
| T |
26964075 |
atctaacctgccattgttccaagtaaattgtaccccatttgtattcagatgtaataataaattggcattggaccaagcaagaaaatccgtacaagaaata |
26963976 |
T |
|
| Q |
228 |
gattgaggaagacgtctgcccctcttctcatgagcccctagaaccgcattaaaatccccaacaaatatccaaggagctataaaattattttgcaacatag |
327 |
Q |
| |
|
|| |||| ||||| | ||||| ||||||||||| || | || |||||||||||||| ||||| ||||| ||||| | ||||||| || | ||| | |
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|
| T |
26963975 |
gagggagggagacgacgtccccttttctcatgagcacccaagacggcattaaaatcccccacaaaaatccacggagcgacgtaattattctggagcattg |
26963876 |
T |
|
| Q |
328 |
ttagatcagccca |
340 |
Q |
| |
|
||||||||||||| |
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|
| T |
26963875 |
ttagatcagccca |
26963863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 21735797 - 21735829
Alignment:
| Q |
270 |
accgcattaaaatccccaacaaatatccaagga |
302 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
21735797 |
accgcattaaaatccccaacaaataaccaagga |
21735829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 4 - 367
Target Start/End: Original strand, 22024884 - 22025247
Alignment:
| Q |
4 |
ggagaagcatagggtggtggtcagattgtgttctcagtagggccgtacaggaagtaccaccccaacaatccagccaagcttcattacaaatggcacgatc |
103 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
22024884 |
ggagcagcaaagggtggtggtcagattgtgttctcagtagggccgtacaggaagtaccaccccaacaatccagccaagcttcattacaaatggcacggtc |
22024983 |
T |
|
| Q |
104 |
gagacgcnnnnnnnctgaatctgtatctaagcggccgttgttccaagtatattgcacaccacttgtattgagatgaagtaacagattggcattagaccaa |
203 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22024984 |
gagacgcaaaaaaactgaatctgtatctaagcggccgttgttccaagtatattgtacaccttttgtattcagatgaagtaacagattggcattagaccaa |
22025083 |
T |
|
| Q |
204 |
gaaagaaagtcattacaagataaagattgaggaagacgtctgcccctcttctcatgagcccctagaaccgcattaaaatccccaacaaatatccaaggag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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|
| T |
22025084 |
gaaagaaagtcattacaagataaagattgaggcagacgtcgacccctcttctcatgagcccctagaaccgcattaaaatccccaacaaagatccaatgag |
22025183 |
T |
|
| Q |
304 |
ctataaaattattttgcaacatagttagatcagcccataattgtctgcgtaaaatatatgatgt |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22025184 |
ctataaaattattttgcaacatagttagatcagcccataattgtctgtgtaaaatatatgatgt |
22025247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 32134992 - 32135068
Alignment:
| Q |
252 |
ttctcatgagcccctagaaccgcattaaaatccccaacaaatatccaaggagctataaaattattttgcaacatagt |
328 |
Q |
| |
|
|||||||||||||||| ||| ||| | ||||||| ||||| ||||| ||||| | |||||||||||| | |||||| |
|
|
| T |
32134992 |
ttctcatgagcccctaaaacggcaatgaaatcccgcacaaagatccatggagccacaaaattattttgaagcatagt |
32135068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 340
Target Start/End: Original strand, 22835044 - 22835256
Alignment:
| Q |
128 |
atctaagcggccgttgttccaagtatattgcacaccacttgtattgagatgaagtaacagattggcattagaccaagaaagaaagtcattacaagataaa |
227 |
Q |
| |
|
|||||| | ||| |||||||||||| |||| || ||| ||||||| ||||| | ||| | ||||||||| ||||||| |||||| || ||||||| | | |
|
|
| T |
22835044 |
atctaacctgccattgttccaagtaaattgtaccccatttgtattcagatgtaataataaattggcattggaccaagcaagaaaatccgtacaagaaaga |
22835143 |
T |
|
| Q |
228 |
gattgaggaagacgtctgcccctcttctcatgagcccctagaaccgcattaaaatccccaacaaatatccaaggagctataaaattattttgcaacatag |
327 |
Q |
| |
|
|| |||| ||||| | ||||| ||||||||||| || | || |||||||||||||| ||||| ||||| ||||| | ||||||| || | ||| | |
|
|
| T |
22835144 |
gagggagggagacgacgtccccttttctcatgagcacccaagacggcattaaaatcccccacaaaaatccacggagcgacgtaattattctggagcattg |
22835243 |
T |
|
| Q |
328 |
ttagatcagccca |
340 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22835244 |
ttagatcagccca |
22835256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0106 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0106
Description:
Target: scaffold0106; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 23419 - 23277
Alignment:
| Q |
144 |
ttccaagtatattgcacaccacttgtattgagatgaagtaacagattggcattagaccaagaaagaaagtcattacaagataaagattgaggaagacgtc |
243 |
Q |
| |
|
||||||||| ||||||| ||| ||||||| | ||| | || ||||| ||||||||||||| ||||||||| | ||||| | ||| |||||||||| | |
|
|
| T |
23419 |
ttccaagtaaattgcaccccatttgtattcaaatgccgcaagagattagcattagaccaagtaagaaagtcggtgcaagaaatagaaggaggaagacggc |
23320 |
T |
|
| Q |
244 |
tgcccctcttctcatgagcccctagaaccgcattaaaatcccc |
286 |
Q |
| |
|
|| || || |||||||| |||| ||||||||||||||||| |
|
|
| T |
23319 |
gacctcttttttcatgagcacctaacaccgcattaaaatcccc |
23277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0437 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0437
Description:
Target: scaffold0437; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 7940 - 7908
Alignment:
| Q |
270 |
accgcattaaaatccccaacaaatatccaagga |
302 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
7940 |
accgcattaaaatccccaacaaataaccaagga |
7908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 13220428 - 13220368
Alignment:
| Q |
246 |
cccctcttctcatgagcccctagaaccgcattaaaatccccaacaaatatccaaggagcta |
306 |
Q |
| |
|
|||| |||||||||||| |||| || ||||||||| ||||| ||||| |||||||| |||| |
|
|
| T |
13220428 |
ccccacttctcatgagcacctaaaatcgcattaaagtcccccacaaaaatccaaggtgcta |
13220368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 12686082 - 12686114
Alignment:
| Q |
77 |
ccaagcttcattacaaatggcacgatcgagacg |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
12686082 |
ccaagcttcattacaaatagcacgatcgagacg |
12686114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 21491715 - 21491759
Alignment:
| Q |
258 |
tgagcccctagaaccgcattaaaatccccaacaaatatccaagga |
302 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| | ||||||| |
|
|
| T |
21491715 |
tgagccccgagcaccgcattaaaatccccaacaaacaaccaagga |
21491759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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