View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11012_high_3 (Length: 249)
Name: NF11012_high_3
Description: NF11012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11012_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 28929322 - 28929103
Alignment:
| Q |
17 |
gttatgattcgtacatgaagtgacggtcattaaaactgacactcataaccgcaacgtatggtaaaggtgtacaaccaaacaatattgacattgtctgtcg |
116 |
Q |
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| T |
28929322 |
gttatgattcgtacatcaagtgacggtcattaaaactgacactcataaccgcaacgtatggtaaaggtgtacaaccaaacaatattgacattgtc----g |
28929227 |
T |
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| Q |
117 |
gttgaactatttcttacataattttcagcattcaagcatttgatacatcagtagtcgtcgactaagagaaagtctatgtatttttgccttgtcagagtag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28929226 |
gttgaactatttcttacataattttcagcattcaagcatttggtacattagtagtcgtcgactaagagaaagtctatgtatttttgcctcgtcagagtag |
28929127 |
T |
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| Q |
217 |
ttcaccgttttccctctgtctctg |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
28929126 |
ttcaccgttttccctctgtctctg |
28929103 |
T |
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