View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11012_low_1 (Length: 383)
Name: NF11012_low_1
Description: NF11012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11012_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 10 - 373
Target Start/End: Complemental strand, 24652979 - 24652616
Alignment:
| Q |
10 |
ggacatcaacttcagtccattctcatcagagtctcaaagctaaatcaatggacagttaggtaaggatagacaaaccaattcacacaacagagctcgatgt |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24652979 |
ggacataaacttcagtccattctcatcagagtctcaaagctaaatcaatggacagttaggtaaggatagacaaaccaattcacacaacagagctcgatgt |
24652880 |
T |
|
| Q |
110 |
gaaaaagtcgaagtcatggtggtggacattgagttgtttcaaccatgagtctgcagcactacatagatatgatatcttttcataatcatttggatcagtg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24652879 |
gaaaaagtcgaagtcatggtggtggacattgagttgtttcaaccatgagtctgcagcactacatagatatgatatcttttcataatcatttggatcagtg |
24652780 |
T |
|
| Q |
210 |
tttagccaaagatcactctgcattttgtaagtggctagcccaaatggaggtagagaaatagagccactgttgtttttcttgcaatcctctcctacaatat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24652779 |
tttagccaaagatcactctgcattttgtaagtggctagcccaaatggaggtagagaaatagagccactgttgtttttcttgcaatcgtctcctacaatat |
24652680 |
T |
|
| Q |
310 |
tttcccagccactggaacaatattcatctttgtccatgtccatgaacatgttcatgatgtccat |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24652679 |
tttcccagccactggaacaatattcatctttgtccatgtccatgaacatgttcatgatgtccat |
24652616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 34565256 - 34565198
Alignment:
| Q |
108 |
gtgaaaaagtcgaagtcatggtggtggacattgagttgtttcaaccatgagtctgcagc |
166 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||| |||||||| ||||||||||| |
|
|
| T |
34565256 |
gtgaaaaagttgaagtcatggtggtgagcgttgagttgcttcaaccacgagtctgcagc |
34565198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University