View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11013_high_1 (Length: 834)
Name: NF11013_high_1
Description: NF11013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11013_high_1 |
 | |
|
| [»] scaffold0349 (2 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 36)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 26063159 - 26062734
Alignment:
| Q |
18 |
tgaatatatttgcttatatctttatgcaattgaattttgatgaatggtcatggcaaacccatttaattaaaaattaaattctattacctgagttgcttgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26063159 |
tgaatatatttgcttatatctttatgcaattgaattttgatgaatgatcatggcaaacccatttaattaaaaattaaattctattacctgagttgcttgc |
26063060 |
T |
|
| Q |
118 |
gagcgaacgcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagagacatcgatccaag |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26063059 |
gagcgaatgcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagggacatcgatccaag |
26062960 |
T |
|
| Q |
218 |
catcagtaccagcttacattctgaaagaaca----cccatccttcccacataggactctaccaaattccagatggattggatattgatattcagacctga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
26062959 |
catcagtaccagcttacattctgaaagataattatgccattcttcccacataggactctaccaaattccagatggattggatattgaagttcaggcctga |
26062860 |
T |
|
| Q |
314 |
tctagc-nnnnnnnttgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattt |
412 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
26062859 |
tctagcgaaaaaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaatagattataaacactacatacaatgcaaatattcaattt |
26062760 |
T |
|
| Q |
413 |
tcatagttaactaaaacaccatataa |
438 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
26062759 |
tcatagttaactaaaacaccatataa |
26062734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 26083128 - 26082703
Alignment:
| Q |
18 |
tgaatatatttgcttatatctttatgcaattgaattttgatgaatggtcatggcaaacccatttaattaaaaattaaattctattacctgagttgcttgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26083128 |
tgaatatatttgcttatatctttatgcaattgaattttgatgaatgatcatggcaaacccatttaattaaaaattaaattctattacctgagttgcttgc |
26083029 |
T |
|
| Q |
118 |
gagcgaacgcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagagacatcgatccaag |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26083028 |
gagcgaatgcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagggacatcgatccaag |
26082929 |
T |
|
| Q |
218 |
catcagtaccagcttacattctgaaagaaca----cccatccttcccacataggactctaccaaattccagatggattggatattgatattcagacctga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
26082928 |
catcagtaccagcttacattctgaaagataattatgccattcttcccacataggactctaccaaattccagatggattggatattgaagttcaggcctga |
26082829 |
T |
|
| Q |
314 |
tctagc-nnnnnnnttgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattt |
412 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
26082828 |
tctagcgaaaaaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaatagattataaacactacatacaatgcaaatattcaattt |
26082729 |
T |
|
| Q |
413 |
tcatagttaactaaaacaccatataa |
438 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
26082728 |
tcatagttaactaaaacaccatataa |
26082703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 457 - 777
Target Start/End: Complemental strand, 25514640 - 25514326
Alignment:
| Q |
457 |
acattaaaatacattatccgaggttggcctccat-aatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagt |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25514640 |
acattaaaatacattatccgaggttggcctccatgaatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagt |
25514541 |
T |
|
| Q |
556 |
aatgaatttgtaactgacgactatatacagaaattaatcaacatt-----------tatacaacaaagcacaaacctgcaatgttgaaattgagagaata |
644 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25514540 |
aatgaatttgtaact---gactatatacagaaattaatcaacatttatacaaagtatatacaacaaagcacaaacctgcaatgttgagattgagagaata |
25514444 |
T |
|
| Q |
645 |
acaagaagacggttaactttatgatggaccccaagtctttctattattaggattcttcaatattaaatcctcctccgtgtcactaaaaccctcctcctcc |
744 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25514443 |
acaagaagacggttaa---------------caagtctttctattattaggattgttcaatattacatcctcctccgtgtcactaaaaccctcctcctcc |
25514359 |
T |
|
| Q |
745 |
tcccctttctctgaaactcccacttccaccaat |
777 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
25514358 |
tcccctttctctgaaactcccacttccaccaat |
25514326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 26147232 - 26147022
Alignment:
| Q |
18 |
tgaatatatttgcttatatctttatgcaattgaattttgatgaatggtcatggcaaacccatttaattaaaaattaaattctattacctgagttgcttgc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26147232 |
tgaatatatttgcttatatctttatgcaattgaattttgatgaatggacatggcaaacccatttaattaaaaattaaattctattacctgagttgcttgc |
26147133 |
T |
|
| Q |
118 |
gagcgaacgcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagagacatcgatccaag |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
26147132 |
gagcgaatgcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttctgtagtagagagggacatcgatccaag |
26147033 |
T |
|
| Q |
218 |
catcagtacca |
228 |
Q |
| |
|
||||||||||| |
|
|
| T |
26147032 |
catcagtacca |
26147022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 484 - 674
Target Start/End: Complemental strand, 25986929 - 25986742
Alignment:
| Q |
484 |
cctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaatttgtaactgacgactatatac |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
25986929 |
cctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaatttgtaacggac---tatatac |
25986833 |
T |
|
| Q |
584 |
agaaattaatcaacatttatacaacaaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaactttatgatggacc |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25986832 |
agaaattaatcaacatttatacaacaaagcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacc |
25986742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 451 - 674
Target Start/End: Complemental strand, 26146806 - 26146574
Alignment:
| Q |
451 |
cataaaacattaaaatacattatccgaggttggcctccat-aatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacg |
549 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26146806 |
cataaaacattcaaatacattatccgaggttggcctccatgaatttacatgtacttctaaaatggtattcattctataatctaatgcatgtctccaaacg |
26146707 |
T |
|
| Q |
550 |
tacagtaatgaatttgtaactgacgactatatacagaaattaatcaacatt-----------tatacaacaaagcacaaacctgcaatgttgaaattgag |
638 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26146706 |
tacagtaatgaatttgtaact---gactatatacagaaattaatcaacatttatacaaagtatatacaacaaagcacaaacctgcaatgttgagattgag |
26146610 |
T |
|
| Q |
639 |
agaataacaagaagacggttaactttatgatggacc |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
26146609 |
agaataacaagaagacggttaactttatgatggacc |
26146574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 263 - 455
Target Start/End: Complemental strand, 26147020 - 26146828
Alignment:
| Q |
263 |
ataggactctaccaaattccagatggattggatattgatattcagacctgatctagcnnnnnnnttgaggaaagcttttgtgaattcatttgactttgat |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26147020 |
ataggactctaccaaattccagatggattgcatattgaagctcagacctgatctagcgaaaaaattgaggaaagcttttgtgaattcatttgactttgat |
26146921 |
T |
|
| Q |
363 |
aaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaactaaaacaccatataaaaactactttttcataa |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26146920 |
aaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcataggtaactaaaacaccatataaaaactactttttcataa |
26146828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 278 - 455
Target Start/End: Complemental strand, 25548833 - 25548656
Alignment:
| Q |
278 |
attccagatggattggatattgatattcagacctgatctagcnnnnnnnttgaggaaagcttttgtgaattcatttgactttgataaaaaccagaataga |
377 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25548833 |
attccagatggattgaatattgaagctcagacctgatctagcgaaaaaaatgaggaaagcttttgtcaattcatttgactttgataaaaaccagaataga |
25548734 |
T |
|
| Q |
378 |
ttataaaaattacatacaatgcaaatattgaattttcatagttaactaaaacaccatataaaaactactttttcataa |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25548733 |
ttataaaaattacatacaatgcaaatattgaatattcatagttaactaaaacaccatataaaaactactttttcataa |
25548656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 212 - 438
Target Start/End: Complemental strand, 25453399 - 25453157
Alignment:
| Q |
212 |
tccaagcatcagtaccagcttacattctgaaagaacaccc--------------atccttcccacataggactctaccaaattccagatggattggatat |
297 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25453399 |
tccacgcatcagtaccagcttacattctgaaagaacaccctcactaattatgccattcttcccatataggactctaccaaattccagatggattggatat |
25453300 |
T |
|
| Q |
298 |
tgatattcagacctgatctagcnnnnnnnttgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaatt--acataca |
395 |
Q |
| |
|
||| ||||| |||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
25453299 |
tgaagttcaggtctgatctagcaaaaaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaatagattataaaaactacacataca |
25453200 |
T |
|
| Q |
396 |
atgcaaatattgaattttcatagttaactaaaacaccatataa |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25453199 |
atgcaaatattgaattttcatagttaactaaaacaccacataa |
25453157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 255 - 438
Target Start/End: Complemental strand, 25489249 - 25489066
Alignment:
| Q |
255 |
cttcccacataggactctaccaaattccagatggattggatattgatattcagacctgatctagcnnnnnnn-ttgaggaaagcttttgtgaattcattt |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
25489249 |
cttcccacataggactctaccaaattccagatggattggatattgaagttcaggcctgatctagcgaaaaaaattgaggaaagcttttgtcaattcattt |
25489150 |
T |
|
| Q |
354 |
gactttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaactaaaacaccatataa |
438 |
Q |
| |
|
|||| |||||||||||||||||||||||| | | |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25489149 |
gactcagataaaaaccagaatagattataacact-acatacaatgcaaatattcaattttcatagttaactaaaacaccatataa |
25489066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 672 - 781
Target Start/End: Complemental strand, 26059503 - 26059394
Alignment:
| Q |
672 |
accccaagtctttctattattaggattcttcaatattaaatcctcctccgtgtcactaaaaccctcctcctcctcccctttctctgaaactcccacttcc |
771 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26059503 |
accccaagtctttctattattaggattcttcaatattacatcctcctccgtgtcactaaaaccctcctcctcctcccctttctctgaaactcccacttcc |
26059404 |
T |
|
| Q |
772 |
accaatcttt |
781 |
Q |
| |
|
|||||||||| |
|
|
| T |
26059403 |
accaatcttt |
26059394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 672 - 781
Target Start/End: Complemental strand, 26079473 - 26079364
Alignment:
| Q |
672 |
accccaagtctttctattattaggattcttcaatattaaatcctcctccgtgtcactaaaaccctcctcctcctcccctttctctgaaactcccacttcc |
771 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26079473 |
accccaagtctttctattattaggattcttcaatattacatcctcctccgtgtcactaaaaccctcctcctcctcccctttctctgaaactcccacttcc |
26079374 |
T |
|
| Q |
772 |
accaatcttt |
781 |
Q |
| |
|
|||||||||| |
|
|
| T |
26079373 |
accaatcttt |
26079364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 25454116 - 25453922
Alignment:
| Q |
21 |
atatatttgcttatatctttatgcaattgaattttgatgaatggtcatggcaaacccatttaattaaaaattaaattctattacctgagttgcttgcgag |
120 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| | |||||||||| ||||| | ||| ||||||| |||||||||||||||| ||||| |
|
|
| T |
25454116 |
atatatttacttatatctttatgcaattgaattttgatgaatgcacgtggcaaacccgtttaactgaaa-ttaaattttattacctgagttgctcgcgag |
25454018 |
T |
|
| Q |
121 |
cgaacgcttcaacccttgtttccatgaatgtgtgta-------actaattgccagttaaggcccttggtctatgttcagtagtagagagagacatc |
209 |
Q |
| |
|
|||| |||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||| |||||| |||||| |
|
|
| T |
25454017 |
cgaatgcttcaacacacgtttccatgaatgtgtgtaactattaactaatcaccagttaaggcccttggtctatgttcaatagaagagagggacatc |
25453922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 558 - 674
Target Start/End: Complemental strand, 25487087 - 25486976
Alignment:
| Q |
558 |
tgaatttgtaactgacgactatatacagaaattaatcaacatttatacaacaaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggt |
657 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25487087 |
tgaatttgtaactgac---tatatacagaaatt--tcaacatttatacaacaaagcacaaacctgcaatgttgagattgagagaataacaagaagacggt |
25486993 |
T |
|
| Q |
658 |
taactttatgatggacc |
674 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
25486992 |
taactttatgatggacc |
25486976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 465 - 561
Target Start/End: Complemental strand, 26061410 - 26061314
Alignment:
| Q |
465 |
atacattatccgaggttggcctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaa |
561 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| ||||||||||||| |
|
|
| T |
26061410 |
atacattatccaaggttggcctccataatttacatgtacttctaaaatggtgttcattctataatctaatgcatgcatctaaatgtacagtaatgaa |
26061314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 465 - 561
Target Start/End: Complemental strand, 26081380 - 26081284
Alignment:
| Q |
465 |
atacattatccgaggttggcctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaa |
561 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| ||||||||||||| |
|
|
| T |
26081380 |
atacattatccaaggttggcctccataatttacatgtacttctaaaatggtgttcattctataatctaatgcatgcatctaaatgtacagtaatgaa |
26081284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 255 - 438
Target Start/End: Complemental strand, 24771533 - 24771350
Alignment:
| Q |
255 |
cttcccacataggactctaccaaattccagatggattggatattgatattcagacctgatctagcnnnnnnnttgaggaaagcttttgtgaattcatttg |
354 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||||||||| |||| ||||||| | ||||||| ||||||||||||||||| |||||| ||| |
|
|
| T |
24771533 |
cttcccacataggactttaccaaactccacatggattggattttgaagttcagacattatctagcacaaaaattgaggaaagcttttgtcaattcacttg |
24771434 |
T |
|
| Q |
355 |
actttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaactaaaacaccatataa |
438 |
Q |
| |
|
| |||||||||||||||||| | |||||| | ||| ||||||||||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
24771433 |
atgctgataaaaaccagaatagtgtgtaaaaactgcatgcaatgcaaatattgaatttacttagttaacttaaacaccatataa |
24771350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 452 - 546
Target Start/End: Complemental strand, 25548628 - 25548535
Alignment:
| Q |
452 |
ataaaacattaaaatacattatccgaggttggcctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaa |
546 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
25548628 |
ataaaacattcaaatacattatccgaggttggcctccatattttacatgtacttctaaaatggtattcatt-tcaaatctaatgcatgcctccaa |
25548535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 558 - 674
Target Start/End: Complemental strand, 26059736 - 26059612
Alignment:
| Q |
558 |
tgaatttgtaactgacgactatatacagaaattaatcaacatttatacaa-----------caaagcacaaacctgcaatgttgaaattgagagaataac |
646 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26059736 |
tgaatttgtaactgactac---atacagaaattaatcaacatttatacaaagtataaacatcaaagcacaaacctgcaatgttgagattgagagaataac |
26059640 |
T |
|
| Q |
647 |
aagaagacggttaactttatgatggacc |
674 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
26059639 |
aagaagacggttaactttatgatggacc |
26059612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 558 - 674
Target Start/End: Complemental strand, 26079706 - 26079582
Alignment:
| Q |
558 |
tgaatttgtaactgacgactatatacagaaattaatcaacatttatacaa-----------caaagcacaaacctgcaatgttgaaattgagagaataac |
646 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26079706 |
tgaatttgtaactgactac---atacagaaattaatcaacatttatacaaagtataaacatcaaagcacaaacctgcaatgttgagattgagagaataac |
26079610 |
T |
|
| Q |
647 |
aagaagacggttaactttatgatggacc |
674 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
26079609 |
aagaagacggttaactttatgatggacc |
26079582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 485 - 561
Target Start/End: Complemental strand, 25488142 - 25488066
Alignment:
| Q |
485 |
ctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaa |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| ||||||||||||| |
|
|
| T |
25488142 |
ctccataatttacatgtacttctaaaatggtgttcattctataatctaatgcatgcatctaaatgtacagtaatgaa |
25488066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 25489933 - 25489850
Alignment:
| Q |
126 |
gcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagagacatc |
209 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||| |
|
|
| T |
25489933 |
gcttcaacacttgtttccatgaatgtgtgtaactaatcaccagttaaggcccttggtctatgttcaatagaagagagggacatc |
25489850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 734 - 781
Target Start/End: Complemental strand, 25486906 - 25486859
Alignment:
| Q |
734 |
cctcctcctcctcccctttctctgaaactcccacttccaccaatcttt |
781 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25486906 |
cctcctcctcctcccctttctctgaaactcccacttccaccaatcttt |
25486859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 734 - 781
Target Start/End: Complemental strand, 26146504 - 26146457
Alignment:
| Q |
734 |
cctcctcctcctcccctttctctgaaactcccacttccaccaatcttt |
781 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26146504 |
cctcctcctcctcccctttctctgaaactcccacttccaccaatcttt |
26146457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 25548948 - 25548902
Alignment:
| Q |
140 |
ttccatgaatgtgtgtaactaattgccagttaaggcccttggtctat |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25548948 |
ttccatgaatgtgtgtaactaattgccagttaaggcccttggtctat |
25548902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 609 - 667
Target Start/End: Original strand, 27661938 - 27661996
Alignment:
| Q |
609 |
aaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaactttatg |
667 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||||| |||||||||||||||||| |
|
|
| T |
27661938 |
aaagcacaaacctgcaaagttgagattgagaggataacaacaagacggttaactttatg |
27661996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 740 - 781
Target Start/End: Complemental strand, 25548499 - 25548458
Alignment:
| Q |
740 |
cctcctcccctttctctgaaactcccacttccaccaatcttt |
781 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25548499 |
cctcctcccctttctctgaaactcccacttccaccaatcttt |
25548458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 25548903 - 25548859
Alignment:
| Q |
207 |
atcgatccaagcatcagtaccagcttacattctgaaagaacaccc |
251 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25548903 |
atcgatccaagcatcagtaccaacttacattctgaaagaacaccc |
25548859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 608 - 664
Target Start/End: Original strand, 27715036 - 27715092
Alignment:
| Q |
608 |
caaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaacttt |
664 |
Q |
| |
|
||||||||||||||| | | |||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
27715036 |
caaagcacaaacctgtattcttgagattgagagaataacaagaagacgattaacttt |
27715092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 608 - 653
Target Start/End: Complemental strand, 27079117 - 27079072
Alignment:
| Q |
608 |
caaagcacaaacctgcaatgttgaaattgagagaataacaagaaga |
653 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||| |||| |
|
|
| T |
27079117 |
caaagcacaaaccttcaatgttgagattgagagaataacaacaaga |
27079072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 640
Target Start/End: Original strand, 27703216 - 27703284
Alignment:
| Q |
574 |
gactatatacagaaattaatcaacatt--tatacaacaaagcacaaacctgcaatgttgaaattgagag |
640 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| ||| ||||||||| ||||||||| |||||||| |
|
|
| T |
27703216 |
gactatatacagaaattaatcaacatttgtaaacagaaaatcacaaacctccaatgttgagattgagag |
27703284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 24772473 - 24772417
Alignment:
| Q |
153 |
tgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagagacatc |
209 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| || ||||||| |||||| |
|
|
| T |
24772473 |
tgtaactaatcaccagtcaaggcccttggtctatgttcaatactagagagggacatc |
24772417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 742 - 781
Target Start/End: Original strand, 27715139 - 27715178
Alignment:
| Q |
742 |
tcctcccctttctctgaaactcccacttccaccaatcttt |
781 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
27715139 |
tcctcctctgtctctgaaactcccacttccaccaatcttt |
27715178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 604 - 670
Target Start/End: Complemental strand, 25077887 - 25077822
Alignment:
| Q |
604 |
acaacaaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaactttatgatg |
670 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| ||| || ||||| |||||||||||||||| |||| |
|
|
| T |
25077887 |
acaacaaaacacaaacctgcaatgttgtgattaaga-aacaacaacaagacggttaactttacgatg |
25077822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 624 - 670
Target Start/End: Original strand, 27423901 - 27423947
Alignment:
| Q |
624 |
aatgttgaaattgagagaataacaagaagacggttaactttatgatg |
670 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||||||||||||||| |
|
|
| T |
27423901 |
aatgttgagattgagagaataacaacaaagcggttaactttatgatg |
27423947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 759
Target Start/End: Complemental strand, 25583193 - 25583153
Alignment:
| Q |
716 |
cctccgtgtcactaaaaccctcctcctcctcccctttctctgaa |
759 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25583193 |
cctccgtgtcactaaaaccctcctc---ctcccctttctctgaa |
25583153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 451 - 518
Target Start/End: Original strand, 17988740 - 17988807
Alignment:
| Q |
451 |
cataaaacattaaaatacattatccgaggttggcctccataatttacatgtacttctaaaatggtatt |
518 |
Q |
| |
|
|||||||| || ||||||||||||| | ||||||||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
17988740 |
cataaaacgttcaaatacattatccaaagttggcctccagaatttacatgaacttctacaatggtatt |
17988807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 608 - 664
Target Start/End: Complemental strand, 16908 - 16852
Alignment:
| Q |
608 |
caaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaacttt |
664 |
Q |
| |
|
||||||||||||||| | | |||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
16908 |
caaagcacaaacctgtattcttgagattgagagaataacaagaagacgattaacttt |
16852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 742 - 781
Target Start/End: Complemental strand, 16805 - 16766
Alignment:
| Q |
742 |
tcctcccctttctctgaaactcccacttccaccaatcttt |
781 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
16805 |
tcctcctctgtctctgaaactcccacttccaccaatcttt |
16766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 637 - 674
Target Start/End: Original strand, 29270329 - 29270366
Alignment:
| Q |
637 |
agagaataacaagaagacggttaactttatgatggacc |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29270329 |
agagaataacaagaagacggttaactttataatggacc |
29270366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 742 - 781
Target Start/End: Original strand, 29270443 - 29270482
Alignment:
| Q |
742 |
tcctcccctttctctgaaactcccacttccaccaatcttt |
781 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
29270443 |
tcctcctctgtctctgaaactcccacttccaccaatcttt |
29270482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 624 - 670
Target Start/End: Complemental strand, 63462 - 63416
Alignment:
| Q |
624 |
aatgttgaaattgagagaataacaagaagacggttaactttatgatg |
670 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||||||||||||||| |
|
|
| T |
63462 |
aatgttgagattgagagaataacaacaaagcggttaactttatgatg |
63416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University