View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11013_high_6 (Length: 331)
Name: NF11013_high_6
Description: NF11013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11013_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 46052406 - 46052624
Alignment:
| Q |
21 |
atctgtactcaaaccattgaaattgaaatctttgctttaatacaaagaaagatttatgactgaaatcaagttagaattctgtttttgagttaa----ttc |
116 |
Q |
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| T |
46052406 |
atctgcactcaaaccattgaaattgaaatctttgctttaatacaaagaaagatttatgactgaaatcaagttagaattctgtttttgagttaattaattc |
46052505 |
T |
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| Q |
117 |
attcattttagaaaacagcaggcctcgtgtctatttctaaagggttggattaatccaacgacacatatacaacaaaaagtgaaaaccagggaatcccttt |
216 |
Q |
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| T |
46052506 |
attcattttagaaaacagcaggcctcgtgtctatttctaaagggttggattaatccaacgacacatatacaacaaaaagtgaaaaccagggaatcccttt |
46052605 |
T |
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| Q |
217 |
ccccatttaaaagaaggtg |
235 |
Q |
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| T |
46052606 |
ccccatttaaaagaaggtg |
46052624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 297
Target Start/End: Original strand, 46052633 - 46052672
Alignment:
| Q |
258 |
ttatttcgtcaaaaaccctgaaaattggtcatcaatggtt |
297 |
Q |
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| T |
46052633 |
ttatttcgtcaaaaaccctgaaaattggtcatcaatggtt |
46052672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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