View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11013_high_7 (Length: 299)
Name: NF11013_high_7
Description: NF11013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11013_high_7 |
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| [»] scaffold0591 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 28701096 - 28701363
Alignment:
| Q |
15 |
ggtagcaccatagagttgcaaagctgtatagcaaatgagaaactttcttcatcttctaattcnnnnnnnnctgacctcctctctccatttccattcacac |
114 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28701096 |
ggtagcaccatagagttgcaaagctgtataccaaatgagaaactttcttcatcttctaattcttttttttctgacctcctctctccatttccattcacac |
28701195 |
T |
|
| Q |
115 |
ctaagtctatcacattagaatggtttgccatatgaacttgaaaatcctaacacccgcaaactaatgtgtgtagctatataagtctagttgtcttgttttg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
28701196 |
ctaagtctatcacattagaatggtttgccatatgaacttgaaaatcctaacacctgcaaactaatgtatgtagc--tataagtctagttgtcttgttttg |
28701293 |
T |
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| Q |
215 |
nnnnnnnnagctatattaaggttcgttttaggcagttgattctttttccagttgtcttgtcttgtttttta |
285 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28701294 |
-tttttttagctatattaaggttcgttttaggtagttgattctttttccagttgtcttgtcttgtttttta |
28701363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 28626082 - 28626239
Alignment:
| Q |
15 |
ggtagcaccatagagttgcaaagctgtatagcaaatgagaaactttcttcatcttctaattcnnnnnnnnctgacctcctctctccatttccattcaca- |
113 |
Q |
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||||||||||||||| | | ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
28626082 |
ggtagcaccatagagctaccaagctgtatagcatatgagaaactttcttcatcttctaattcttgtttttctgatctcctctctccatttccattcacat |
28626181 |
T |
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| Q |
114 |
--cctaagtctatcacattagaatggtttgccatatgaacttgaaaatcctaacaccc |
169 |
Q |
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| T |
28626182 |
gacctaagtctaacacattagaatggtttgccatgtgaacttgaaaatccaaacaccc |
28626239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 28711998 - 28712150
Alignment:
| Q |
15 |
ggtagcaccatagagttgcaaagctgtatagcaaatgagaaactttcttcatcttctaattcnnnnnnnnctgacctcctctctccatttccattcac-- |
112 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |
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| T |
28711998 |
ggtagcaccatagaactgcaaagttgtatagcaaatgagaaactttcttcatcttctaattcttgtttttctgatctcctctctccattaccattcacat |
28712097 |
T |
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| Q |
113 |
-acctaagtctatcacattagaatggtttgccatatgaacttgaaaatcctaa |
164 |
Q |
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||| ||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
28712098 |
gaccgaagtctaacacattagaatggtttgccatgtgaacttgaaaatcctaa |
28712150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 28719345 - 28719497
Alignment:
| Q |
15 |
ggtagcaccatagagttgcaaagctgtatagcaaatgagaaactttcttcatcttctaattcnnnnnnnnctgacctcctctctccatttccattcac-- |
112 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |
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| T |
28719345 |
ggtagcaccatagaactgcaaagttgtatagcaaatgagaaactttcttcatcttctaattcttgtttttctgatctcctctctccattaccattcacat |
28719444 |
T |
|
| Q |
113 |
-acctaagtctatcacattagaatggtttgccatatgaacttgaaaatcctaa |
164 |
Q |
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||| ||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
28719445 |
gaccgaagtctaacacattagaatggtttgccatgtgaacttgaaaatcctaa |
28719497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 28726987 - 28727139
Alignment:
| Q |
15 |
ggtagcaccatagagttgcaaagctgtatagcaaatgagaaactttcttcatcttctaattcnnnnnnnnctgacctcctctctccatttccattcac-- |
112 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |
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| T |
28726987 |
ggtagcaccatagaactgcaaagttgtatagcaaatgagaaactttcttcatcttctaattcttgtttttctgatctcctctctccattaccattcacat |
28727086 |
T |
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| Q |
113 |
-acctaagtctatcacattagaatggtttgccatatgaacttgaaaatcctaa |
164 |
Q |
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||| ||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
28727087 |
gaccgaagtctaacacattagaatggtttgccatgtgaacttgaaaatcctaa |
28727139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 28731687 - 28731748
Alignment:
| Q |
15 |
ggtagcaccatagagttgcaaagctgtatagcaaatgagaaactttcttcatcttctaattc |
76 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
28731687 |
ggtagcaccatagagttgcaaagctgtatagcatataagaaactttcttcatcttctaattc |
28731748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 28712255 - 28712296
Alignment:
| Q |
243 |
taggcagttgattctttttccagttgtcttgtcttgtttttt |
284 |
Q |
| |
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|||| |||||| | |||||||||||||||||||||||||||| |
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| T |
28712255 |
taggtagttgaatatttttccagttgtcttgtcttgtttttt |
28712296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 28719602 - 28719643
Alignment:
| Q |
243 |
taggcagttgattctttttccagttgtcttgtcttgtttttt |
284 |
Q |
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|||| |||||| | |||||||||||||||||||||||||||| |
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| T |
28719602 |
taggtagttgaatatttttccagttgtcttgtcttgtttttt |
28719643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 28727244 - 28727285
Alignment:
| Q |
243 |
taggcagttgattctttttccagttgtcttgtcttgtttttt |
284 |
Q |
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|||| |||||| | |||||||||||||||||||||||||||| |
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| T |
28727244 |
taggtagttgaatatttttccagttgtcttgtcttgtttttt |
28727285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 5202 - 5022
Alignment:
| Q |
15 |
ggtagcaccatagagttgcaaagctgtatagcaaatgagaaactttcttcatcttctaattcnnnnnnnnctgacctcctctctccatttccattcaca- |
113 |
Q |
| |
|
||||||||||||||| | | ||||||||||||| |||||||||||||||||||||||||||| | || ||||||||||||||||||||||| |
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| T |
5202 |
ggtagcaccatagagctaccaagctgtatagcatatgagaaactttcttcatcttctaattcttgtttttcggatttcctctctccatttccattcacat |
5103 |
T |
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| Q |
114 |
--cctaagtctatcacattagaatggtttgccatatgaacttgaaaatcctaacacccgcaaactaatgtgtgtagctata |
192 |
Q |
| |
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||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | |||||||| |
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| T |
5102 |
gacctaagtctttcacattagaatggtttgccatgtgtacttgaaaatcctaacacccgcaaactaatgtatatagctata |
5022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 5003 - 4959
Alignment:
| Q |
240 |
ttttaggcagttgattctttttccagttgtcttgtcttgtttttt |
284 |
Q |
| |
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||||||| ||||| ||||||||||||||||||||||| |||||| |
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| T |
5003 |
ttttaggtagttgtctctttttccagttgtcttgtcttatttttt |
4959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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