View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11013_high_8 (Length: 250)

Name: NF11013_high_8
Description: NF11013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11013_high_8
NF11013_high_8
[»] chr8 (10 HSPs)
chr8 (9-250)||(28700756-28700997)
chr8 (8-250)||(28625741-28625983)
chr8 (9-250)||(28731347-28731588)
chr8 (9-250)||(28740286-28740527)
chr8 (15-250)||(28644242-28644477)
chr8 (9-250)||(28726647-28726888)
chr8 (15-250)||(28636508-28636743)
chr8 (9-250)||(28711658-28711899)
chr8 (9-250)||(28719005-28719246)
chr8 (15-188)||(28653194-28653367)
[»] scaffold0591 (1 HSPs)
scaffold0591 (15-250)||(5301-5536)
[»] chr6 (2 HSPs)
chr6 (60-125)||(29646012-29646077)
chr6 (190-225)||(29645909-29645944)
[»] chr7 (2 HSPs)
chr7 (190-245)||(49110063-49110118)
chr7 (39-145)||(49109912-49110018)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 28700756 - 28700997
Alignment:
Q  9 gagaagaactaaccagctagccaagaaaaccttatcttgatacaaagccagcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagca 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28700756 gagatgaactaaccagctagccaagaaaaccttatcttgatacaaagccagcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagca 28700855  T
Q  109 acaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaacacatcatgtgaggcaagaagagcaagaa 208  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28700856 acaggagtcatactataaagtctacgaaatgatccaagcttttgttcatcttgaatgaccaaacactttaacacatcatgtgatgcaagaagagcaagaa 28700955  T
Q  209 tgcgatccaacattttgggagcatcaggattgctgcaagaaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28700956 tgcgatccaacattttgggagcatcaggattgctgcaagaaa 28700997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 28625741 - 28625983
Alignment:
Q  8 agagaagaactaaccagctagccaagaaaaccttatcttgatacaaagccagcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagc 107  Q
    ||||| ||||| |||||||||| |||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  28625741 agagatgaacttaccagctagctaagaaaacattatcttgacacaaagccaaaaagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagc 28625840  T
Q  108 aacaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaacacatcatgtgaggcaagaagagcaaga 207  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  28625841 aacaggagtcatactataaagtctatgaaatgatccaagcttttgttcatcttgaatcaccaaacactttaacacatcatgtgatgcaagaagaacaaga 28625940  T
Q  208 atgcgatccaacattttgggagcatcaggattgctgcaagaaa 250  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28625941 atgcgatccaacattttgggagcatcaggattgctgcaagaaa 28625983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 28731347 - 28731588
Alignment:
Q  9 gagaagaactaaccagctagccaagaaaaccttatcttgatacaaagccagcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagca 108  Q
    |||| ||||| |||||||||| ||||||||||||||||||  |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28731347 gagatgaacttaccagctagctaagaaaaccttatcttgacccaaagccaacaaaggtcctaatgaaacaccatcagaattaggagcaaaaaacctagca 28731446  T
Q  109 acaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaacacatcatgtgaggcaagaagagcaagaa 208  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||    
T  28731447 acaggagtcatactataaagtctatgaaatgatccaagcttttgttcatcttgaatgaacaaacactttaacacatcatgtgatgcaagaagaacaagaa 28731546  T
Q  209 tgcgatccaacattttgggagcatcaggattgctgcaagaaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28731547 tgcgatccaacattttgggagcatcaggattgctgcaagaaa 28731588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 28740286 - 28740527
Alignment:
Q  9 gagaagaactaaccagctagccaagaaaaccttatcttgatacaaagccagcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagca 108  Q
    |||| |||||||||||||||| |||||||| |||||||||  ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28740286 gagatgaactaaccagctagctaagaaaacattatcttgaatcaaagccaaaaagggacctaatgaaacaccatcagaattaggagcaaaaaacctagca 28740385  T
Q  109 acaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaacacatcatgtgaggcaagaagagcaagaa 208  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  28740386 acaggagtcatactataaagtctatgaaatgatccaagcttttgttcatcttgaatgagcaaacactttaacacatcatgtgatgcaagaagagcaagaa 28740485  T
Q  209 tgcgatccaacattttgggagcatcaggattgctgcaagaaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28740486 tgcgatccaacattttgggagcatcaggattgctgcaagaaa 28740527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 28644242 - 28644477
Alignment:
Q  15 aactaaccagctagccaagaaaaccttatcttgatacaaagccagcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacagga 114  Q
    ||||||||||||||| |||||||| |||||||||  ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28644242 aactaaccagctagctaagaaaacattatcttgaatcaaagacaacaatggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacagga 28644341  T
Q  115 gtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaacacatcatgtgaggcaagaagagcaagaatgcgat 214  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28644342 gtcatactataaagtctatgaaatgttccaagcttttgttcatcttgaatgaccaaacactttaacacatcatgtgaggcaagaacagcaagaatgcgat 28644441  T
Q  215 ccaacattttgggagcatcaggattgctgcaagaaa 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  28644442 ccaacattttgggagcatcaggattgctgcaagaaa 28644477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 28726647 - 28726888
Alignment:
Q  9 gagaagaactaaccagctagccaagaaaaccttatcttgatacaaagccagcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagca 108  Q
    |||| ||||| |||||||||| ||||||||||||||||||  |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28726647 gagatgaacttaccagctagctaagaaaaccttatcttgacccaaagccaacaaaggtcctaatgaaacaccatcagaattaggagcaaaaaacctagca 28726746  T
Q  109 acaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaacacatcatgtgaggcaagaagagcaagaa 208  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||    
T  28726747 acaggagtcatactataaagtctatgaaatgttccaagcttttgttcatcttgaatgatcaaacactttaacacatcatgtgatgcaagaagaacaagaa 28726846  T
Q  209 tgcgatccaacattttgggagcatcaggattgctgcaagaaa 250  Q
    |||||||||||||||||||||||||| ||||| |||| ||||    
T  28726847 tgcgatccaacattttgggagcatcaagattgttgcaggaaa 28726888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 28636508 - 28636743
Alignment:
Q  15 aactaaccagctagccaagaaaaccttatcttgatacaaagccagcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacagga 114  Q
    ||||||||||||||| |||||||| |||||||||  ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28636508 aactaaccagctagctaagaaaacattatcttgaatcaaagacaacaaaggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacagga 28636607  T
Q  115 gtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaacacatcatgtgaggcaagaagagcaagaatgcgat 214  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||    
T  28636608 gtcatactataaagtctatgaaatgttccaagcttttgttcatcttgaatgaccaaacactttaacacatcatgggatgcaagaagagcaaggatgcgat 28636707  T
Q  215 ccaacattttgggagcatcaggattgctgcaagaaa 250  Q
    |||||||||| || ||||||||||||||||||||||    
T  28636708 ccaacattttcggggcatcaggattgctgcaagaaa 28636743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 28711658 - 28711899
Alignment:
Q  9 gagaagaactaaccagctagccaagaaaaccttatcttgatacaaagccagcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagca 108  Q
    |||| ||||| |||||||||| ||||||||||||||||||  |||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  28711658 gagatgaacttaccagctagctaagaaaaccttatcttgacccaaagccaacaatggtcctaatgaaacgccatcagaattaggagcaaaaaacctagca 28711757  T
Q  109 acaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaacacatcatgtgaggcaagaagagcaagaa 208  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  28711758 acaggagtcatactataaagtctatgaaatgttccaagcttttcttcatcttgaatgatcaaacactttaacacatcatgtgaggcaagaacagcaagaa 28711857  T
Q  209 tgcgatccaacattttgggagcatcaggattgctgcaagaaa 250  Q
    |||||||||||||||||||||||||| ||||| |||| ||||    
T  28711858 tgcgatccaacattttgggagcatcaagattgttgcaggaaa 28711899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 28719005 - 28719246
Alignment:
Q  9 gagaagaactaaccagctagccaagaaaaccttatcttgatacaaagccagcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagca 108  Q
    |||| ||||| |||||||||| ||||||||||||||||||  |||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  28719005 gagatgaacttaccagctagctaagaaaaccttatcttgacccaaagccaacaatggtcctaatgaaacgccatcagaattaggagcaaaaaacctagca 28719104  T
Q  109 acaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaacacatcatgtgaggcaagaagagcaagaa 208  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  28719105 acaggagtcatactataaagtctatgaaatgttccaagcttttcttcatcttgaatgatcaaacactttaacacatcatgtgaggcaagaacagcaagaa 28719204  T
Q  209 tgcgatccaacattttgggagcatcaggattgctgcaagaaa 250  Q
    |||||||||||||||||||||||||| ||||| |||| ||||    
T  28719205 tgcgatccaacattttgggagcatcaagattgttgcaggaaa 28719246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 28653194 - 28653367
Alignment:
Q  15 aactaaccagctagccaagaaaaccttatcttgatacaaagccagcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacagga 114  Q
    ||||||||||||||| |||||||| |||||||||  ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28653194 aactaaccagctagctaagaaaacattatcttgaatcaaagacaacaatggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacagga 28653293  T
Q  115 gtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaacacatcatg 188  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28653294 gtcatactataaagtctatgaaatgttccaagcttttgttcatcttgaatgaccaaacactttaacacatcatg 28653367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 5536 - 5301
Alignment:
Q  15 aactaaccagctagccaagaaaaccttatcttgatacaaagccagcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacagga 114  Q
    ||||||||||||||| |||||||| |||||||||  ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5536 aactaaccagctagctaagaaaacattatcttgaatcaaagtcaacaatggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacagga 5437  T
Q  115 gtcatactataaagtctatgaaatgatccaaacttttgttcatcttgaatgaccaaacactttaacacatcatgtgaggcaagaagagcaagaatgcgat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5436 gtcatactataaagtctatgaaatgatccaaacttttgttcatcttcaatgaccaaacactttaacacatcatgtgatgcaagaagagcaagaatgcgat 5337  T
Q  215 ccaacattttgggagcatcaggattgctgcaagaaa 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  5336 ccaacattttgggagcatcaggattgctgcaagaaa 5301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 29646077 - 29646012
Alignment:
Q  60 caagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactata 125  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  29646077 caagggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctata 29646012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 225
Target Start/End: Complemental strand, 29645944 - 29645909
Alignment:
Q  190 gaggcaagaagagcaagaatgcgatccaacattttg 225  Q
    ||||||||||||||||||||||||||||||||||||    
T  29645944 gaggcaagaagagcaagaatgcgatccaacattttg 29645909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 49110063 - 49110118
Alignment:
Q  190 gaggcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgca 245  Q
    |||||||||||||||||||||||||| |||||||| || ||||| |||||| ||||    
T  49110063 gaggcaagaagagcaagaatgcgatctaacattttaggtgcatctggattggtgca 49110118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 49109912 - 49110018
Alignment:
Q  39 cttatcttgatacaaagccagcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaat 138  Q
    |||||| |||| ||| || | |||||| || |||||||||||||| |||||||||||||| ||  | ||||||| |||||||   || ||||| |||||     
T  49109912 cttatcctgatgcaatgcgatcaagggacccaatgaaacaccatcggaattaggagcaaagaatttggcaacagaagtcatagcgtagagtctgtgaaag 49110011  T
Q  139 gatccaa 145  Q
    |||||||    
T  49110012 gatccaa 49110018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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