View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11013_low_2 (Length: 655)
Name: NF11013_low_2
Description: NF11013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11013_low_2 |
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| [»] scaffold0735 (2 HSPs) |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 365
Target Start/End: Original strand, 42923219 - 42923571
Alignment:
| Q |
13 |
gcacagacatgattgaacgtacaatgcttatattaaacaatatacaaaacattttccttaaacaaagaacactttatgcatgtggtgagaagaaatgaga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42923219 |
gcacagacatgattgaacgtacaatgcttatattaaacaatatacaaaacattttccttaaacaaagaacactttatgcatgtggtgagaagaaatgaga |
42923318 |
T |
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| Q |
113 |
gtcaaaaaaggaagagtagtacaattgagagcagaattgttggatgaatttggttgggtggatttccttgtatgtagaaattggtaaaagattaagaaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42923319 |
gtcaaaaaaggaagagtagtacaattgagagcagaattgttggatgaatttggttgggtggatttccttgtatgtagaaattggtaaaagattaagaaga |
42923418 |
T |
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| Q |
213 |
gaaagagaaaaacagtggattaaaaatggtaatgggaagctttatcgtatggagtgtttggaaggaacaagagtgggaatcctattgtcagaattttcat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42923419 |
gaaagagaaaaacagtggattaaaaatggtaatgggaagctttatcgtatggagtgtttggaaggaacaagagtgggaatcctattgtcagaattttcat |
42923518 |
T |
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| Q |
313 |
tcatttgtattggttttgtgcattctgccacccccttcctgcactacttgcag |
365 |
Q |
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| T |
42923519 |
tcatttgtattggttttgtgcattctgccacccccttcctgcactacttgcag |
42923571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 431 - 527
Target Start/End: Original strand, 42923637 - 42923733
Alignment:
| Q |
431 |
aaactgtctctcacggtaagattctactccaatattactgagttctctaaattctgtgcaactttcctttttactattatttatagcattcttttcg |
527 |
Q |
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| T |
42923637 |
aaactgtctctcacggtaagattctactccaatattactgagttctctaaattctgtgcaactttcctttttactattatttatagcattcttttcg |
42923733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 555 - 618
Target Start/End: Original strand, 5657055 - 5657118
Alignment:
| Q |
555 |
cactctttaaaatttctaaataaagaagttatttattcaaaaagtttaataattcaattttcaa |
618 |
Q |
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| T |
5657055 |
cactctttaaagtttttaaataaagaagttattttttcaaaaagttaaacaatttcattttcaa |
5657118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 546 - 614
Target Start/End: Original strand, 37348347 - 37348415
Alignment:
| Q |
546 |
tctttaggtcactctttaaaatttctaaataaagaagttatttattcaaaaagtttaataattcaattt |
614 |
Q |
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| T |
37348347 |
tctttaagtcacactttaaggtttttaaataaaaaatttattcattcaaaaaattaaataattcaattt |
37348415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0735 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: scaffold0735
Description:
Target: scaffold0735; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 87 - 365
Target Start/End: Original strand, 5024 - 5303
Alignment:
| Q |
87 |
tatgcatgtggtgagaagaaatgagagtcaaaaaaggaagagtagtacaattgagagcagaa-ttgttggatgaatttggttgggtggatttccttgtat |
185 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5024 |
tatgcatgtggtgagaagagatgagagtcaaaaaaggaagagtagtacaattgagaggagaggttgttggatgaatttggttgggtggatttccttgtat |
5123 |
T |
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| Q |
186 |
gtagaaattggtaaaagattaagaagagaaagagaaaaacagtggattaaaaatggtaatgggaagctttatcgtatggagtgtttggaaggaacaagag |
285 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5124 |
gtagaaattggtgaaagattaagaagagagagagaaaaacagtggagtaaaaatggtaatgggaagctttatcgtatggattgtttggaaggaacaagag |
5223 |
T |
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| Q |
286 |
tgggaatcctattgtcagaattttcattcatttgtattggttttgtgcattctgccacccccttcctgcactacttgcag |
365 |
Q |
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| T |
5224 |
tgggaatcctattgtcagaattttcattcatttgtattggttttgtgcattgtgccacccccttcctgcactacttgcag |
5303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0735; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 431 - 527
Target Start/End: Original strand, 5369 - 5465
Alignment:
| Q |
431 |
aaactgtctctcacggtaagattctactccaatattactgagttctctaaattctgtgcaactttcctttttactattatttatagcattcttttcg |
527 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5369 |
aaactgtctctcacggtaagattctactccaatattactgagttctctaaattctgtgcaactttcctttttactattatttatagcattcttttcg |
5465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 15111 - 14880
Alignment:
| Q |
13 |
gcacagacatgattgaacgtacaatgcttatattaaacaatatacaaaacattttccttaaacaaagaacactttatgcatgtggtgagaagaaatgaga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15111 |
gcacagacatgattgaacgtacaatgcttatattaaacaatatacaaaacattttccttaaacaaagaacactttatgcatgtggtgagaagaaatgaga |
15012 |
T |
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| Q |
113 |
gtcaaaaaaggaagagtagtacaattgagagcagaattgttggatgaatttggttgggtggatttccttgtatgtagaaattggtaaaagattaagaaga |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15011 |
gtcaaaaaaggaagagtagtacaattgagagcagaattgttggatgaatttggttgggtggatttccttgtatgtagaaattggtaaaagatt-agaaga |
14913 |
T |
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| Q |
213 |
gaaagagaaaaacagtggattaaaaatggtaatgg |
247 |
Q |
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||||||| ||||| ||||||| ||||||||||||| |
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| T |
14912 |
gaaagag-aaaacggtggatt-aaaatggtaatgg |
14880 |
T |
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