View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11013_low_3 (Length: 467)
Name: NF11013_low_3
Description: NF11013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11013_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 46 - 451
Target Start/End: Original strand, 10904848 - 10905253
Alignment:
| Q |
46 |
atatgacaattcccaaccattataaatacatgttctaagcatgtttttgggaccttttcacagtttttcaaacaaaacccagtttgcacaaacatttggg |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10904848 |
atatgacaattcccaaccattataaatacatgttctaagcatgtttttgggaccttttcacagtttttcaaacaaaacccagtttgcacaaacatttggg |
10904947 |
T |
|
| Q |
146 |
aaaggtcatttgcatccaatgattaaagtcctaaggtttggagagagtacttgaagctcctatggagtcacctacttcctttccttcttatcttgtgtct |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10904948 |
aaaggtcatttgcatccaatgattaaagtcctaaggtttggagagagtacttgaagctcctatggagtcacctacttcctttccttcttatcttgtgtct |
10905047 |
T |
|
| Q |
246 |
atcttttgcaattaggatttttaggctaggttacatatgatctctcttgttcccgagacaatttgaatattttgtagattgatactttgttttaatatga |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10905048 |
atcttttgcaattaggatttttaggctaggttacatatgatctctcttgttcccgagacaatttgaatattttgtagattgatactttgttttaatatga |
10905147 |
T |
|
| Q |
346 |
ctcatgtacttaattctatgcttaatgtttttcatggactaatactataaagtactagtgatttagaattggaatgacaaggttggtccttgacaccgac |
445 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10905148 |
ctcatgcacttaattctatgcttaatgtttttcatggactaatactataaagtactagtgatttagaattggaatgacaaggttggtccttgacaccgac |
10905247 |
T |
|
| Q |
446 |
aaggtg |
451 |
Q |
| |
|
|||||| |
|
|
| T |
10905248 |
aaggtg |
10905253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 252 - 438
Target Start/End: Original strand, 10863904 - 10864093
Alignment:
| Q |
252 |
tgcaattaggatttttaggctaggttacatat------gatctctcttgttcccgagacaatttgaatattttgtagattgatactttgttttaatatga |
345 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10863904 |
tgcaattaagatttttaggctaggttacatatgaatatgatctctcttgttcctgagacaatttgaatattttttagattgatactttgttttaatatct |
10864003 |
T |
|
| Q |
346 |
ctcatgtacttaattctatgcttaatgtttttcatggactaatactataaagtactagtgatttagaattggaatgacaaggttggtccttga |
438 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||||||||| || | | ||| ||||||||||||| |||||||||| || ||||| ||||| |
|
|
| T |
10864004 |
ttcatgttgttaattcaatgtttaatgtttttcatggaatactcttgtaa---tctagtgatttagagttggaatgactagattggttcttga |
10864093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 10863846 - 10863903
Alignment:
| Q |
140 |
tttgggaaaggtcatttgcatccaatgattaaagtcctaaggtttggagagagtacttg |
198 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| || |||||||||| |
|
|
| T |
10863846 |
tttgggaaaggtcatttgcatcacatgattaaagtcctaaggtttaga-agagtacttg |
10863903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 10863795 - 10863832
Alignment:
| Q |
46 |
atatgacaattcccaaccattataaatacatgttctaa |
83 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10863795 |
atatgacaattttcaaccattataaatacatgttctaa |
10863832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University