View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11013_low_4 (Length: 400)
Name: NF11013_low_4
Description: NF11013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11013_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 42185499 - 42185132
Alignment:
| Q |
1 |
agatggagtacaacacaacacaacacagcaaagagtcttattcacataaaacagaaacactggttgtacagaaacactgagttgttgacttgttgtttca |
100 |
Q |
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| T |
42185499 |
agatggagtacaacacgacacaacatagcaaagagtcttattcacataaaacagaaacactggttgt------------------tgacttgttgtttca |
42185418 |
T |
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| Q |
101 |
tcagtttttcttctactatataatataacaacaaacatcactgaacaataggctataatgcatagttgaattttgataaatatgcaagcacaataagatt |
200 |
Q |
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| T |
42185417 |
tcagtttttcttctactatataatataacaacaaacatcactgaacaataggctataatgcatagttgaattttgataaatatgcaagcacaataagatt |
42185318 |
T |
|
| Q |
201 |
acattatagaacagaacaataatcttaggttaaatgaaacttaaaagcagaaggtgctaattaattaatttacatatgaaatatgattaaacttattgag |
300 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42185317 |
acattacagaatagaacaataatcttaggttaaatgaaacttaaaatcagaaggtgctaattaattaatttacatatgaaatatgattaaacttattgag |
42185218 |
T |
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| Q |
301 |
taaggcaatttcagaattagctcttgatgatgcaacatttggactgctattaccactactatcagaaaatgaagcaagtgttttat |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42185217 |
taaggcaatttcagaattagctcttgatgatgcaacatttggactgctattaccactactatcagaaaatgaagcaagtgttttat |
42185132 |
T |
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