View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11013_low_5 (Length: 358)
Name: NF11013_low_5
Description: NF11013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11013_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 41481029 - 41481360
Alignment:
| Q |
17 |
agaaacatatcaagacaaagttgacttatgacttcaagattttgttttaatgtatttgatgctaaatttttagttaagtattttatgggagtgcctacga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
41481029 |
agaaacatatcaagacaaagttgacttatgacttcaagattttgttttaatgtatttgatgctaattttttagttaagtattttatgagagtgcctacga |
41481128 |
T |
|
| Q |
117 |
ctgtaatttatgaccctaaaactattagtttcttattaatccataatcatgtttagtaaagttaattgtgattagcttttacatttggataagtttgtta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41481129 |
ctgtaatttatgaccctaaaactattagtttcttattaatccataataatgtttagtagagttaattgtgattagcttttacatttggataagtttgtta |
41481228 |
T |
|
| Q |
217 |
gttagttacataagacttgttctctaagttaaatatataagtactatgtaacctctctattc-atcaataaatagaattaacaactttccaatactttat |
315 |
Q |
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|
||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41481229 |
gttagttacataagacttgttctctaagtcatatatataaatactatgtaacctctctattcaatcaataaatagaattaacaactttccaatactttat |
41481328 |
T |
|
| Q |
316 |
tctctctccctaacaacctctaactactctct |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
41481329 |
tctctctccctaacaacctctaactactctct |
41481360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 139 - 343
Target Start/End: Complemental strand, 41645568 - 41645364
Alignment:
| Q |
139 |
tattagtttcttattaatccataatcatgtttagtaaagttaattgtgattagcttttacatttggataagtttgttagttagttacataagacttgttc |
238 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||| ||||| | | |
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| T |
41645568 |
tattagtttgttattaatccataaccatgtttagtagagttaagtgtgtttagctttacaatttggataagtttgttagttagttacaagagactcgcac |
41645469 |
T |
|
| Q |
239 |
tctaagttaaatatataagtactatgtaacctctctattcatcaataaatagaattaacaactttccaatactttattctctctccctaacaacctctaa |
338 |
Q |
| |
|
||||||| | ||||||| || | |||||| ||| ||||||| ||| ||| | ||| |||||| ||||||| |||| ||||||||||||||||||||| |
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| T |
41645468 |
tctaagtcatgtatataaatattttgtaacttctttattcattaattaatgaacataataacttttcaatactctattatctctccctaacaacctctaa |
41645369 |
T |
|
| Q |
339 |
ctact |
343 |
Q |
| |
|
||||| |
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|
| T |
41645368 |
ctact |
41645364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 142 - 339
Target Start/End: Complemental strand, 26628806 - 26628610
Alignment:
| Q |
142 |
tagtttcttattaatccataatcatgtttagtaaagttaattgtgattagcttttacatttggataagtttgttagttagttacataagacttgttctct |
241 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||| | || |||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
26628806 |
tagtttgttattaatccataatcatgtttagtagagttaagtttgtttagcttt-acatttggataagtttgttagttagttacataagacttgcactct |
26628708 |
T |
|
| Q |
242 |
aagttaaatatataagtactatgtaacctctctattcatcaataaatagaattaacaactttccaatactttattctctctccctaacaacctctaac |
339 |
Q |
| |
|
|||||| ||||||| || | |||||| ||| ||| || ||| ||| | |||||||||||||||||| | |||||||||| |||||| ||||||| |
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|
| T |
26628707 |
aagttatgtatataaatattttgtaactcctcaattaattaatcaatgaacataacaactttccaatactctcttctctctccataacaaactctaac |
26628610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 144 - 334
Target Start/End: Complemental strand, 29982768 - 29982579
Alignment:
| Q |
144 |
gtttcttattaatccataatcatgtttagtaaagttaattgtgattagcttttacatttggataagtttgttagttagttacat-aagacttgttctcta |
242 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
29982768 |
gtttgttattgatccataatcaagtttagtagagttagttgtgattagc-tttacatttggataagtttgttagttagctacatgaagacttgttctcta |
29982670 |
T |
|
| Q |
243 |
agttaaatatataagtactatgtaacctctctattcatcaataaatagaatta-acaactttccaatactttattctctctccctaacaacct |
334 |
Q |
| |
|
||||| ||||||| ||| |||||| |||||||||||||| ||| ||| | | |||||||||||||| |||||||||||| ||||||||| |
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|
| T |
29982669 |
agttatgtatataaataccatgtaa--actctattcatcaatcaatgaaatcataaaactttccaatactctattctctctccataacaacct |
29982579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 139 - 343
Target Start/End: Complemental strand, 12103575 - 12103369
Alignment:
| Q |
139 |
tattagtttcttattaatcca-taatcatgtttagtaaagttaattgtgattagcttttacatttggataagtttgttagttagttacataagacttgtt |
237 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| |||||||| || ||| |||| ||| |||||||||| ||||||||||||||||||| ||| | |
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|
| T |
12103575 |
tattagtttgttattaatccaataatcatgtttagtagagttaattttgtttaacttt-acaattggataagtccgttagttagttacataagatttgct |
12103477 |
T |
|
| Q |
238 |
ctctaagttaaatatataagtactatgtaacctctctattcatcaataaat--agaattaacaactttccaatactttattctctctccctaacaacctc |
335 |
Q |
| |
|
|||||||||| ||||||| |||| |||| ||||||||| ||||| ||| | | |||||||||||||||||| ||||||||||| ||||| |||| |
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|
| T |
12103476 |
ctctaagttatgtatataaatactttgtagtttctctattcgtcaatcaatgaaacaataacaactttccaatactctattctctctctgtaacatcctc |
12103377 |
T |
|
| Q |
336 |
taactact |
343 |
Q |
| |
|
|||||||| |
|
|
| T |
12103376 |
taactact |
12103369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 3788793 - 3788742
Alignment:
| Q |
139 |
tattagtttcttattaatccataatcatgtttagtaaagttaattgtgatta |
190 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
3788793 |
tattagtttgttattaatccataatcatgtttagtagagttagttgtgatta |
3788742 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 10879102 - 10879017
Alignment:
| Q |
139 |
tattagtttcttattaatccataatcat-gtttagtaaagttaattgtgattagcttttacatttggataagtttgttagttagtta |
224 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| | ||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10879102 |
tattagtttgttattaatccataatcattgtttagcagagttagttgtgattagcttt-acatttggataagtttgttagttagtta |
10879017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 240 - 347
Target Start/End: Complemental strand, 10878604 - 10878498
Alignment:
| Q |
240 |
ctaagttaaatatataagtactatgtaacctctctattcatcaataaatagaattaacaactttccaatactttattctctctccctaacaacctctaac |
339 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||||||||||||| ||| || ||||||||||||||||| || ||||||||| ||||||||||||| |
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|
| T |
10878604 |
ctaagttatgtatataaatactatgtaaactctctattcatcaatcaatgaaaataacaactttccaatac-ttcttctctctctataacaacctctaat |
10878506 |
T |
|
| Q |
340 |
tactctct |
347 |
Q |
| |
|
|||||||| |
|
|
| T |
10878505 |
tactctct |
10878498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 36948646 - 36948733
Alignment:
| Q |
139 |
tattagtttcttattaatccataatcatgtttagtaaagttaattgtgattagcttttacatttggataagtttgttagttagttaca |
226 |
Q |
| |
|
||||||||| | ||||||||||||| |||||| || |||||| | || |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
36948646 |
tattagtttgtgattaatccataattatgtttcctagagttaagtttgtttagctttaccatttggataagtttgttagttagttaca |
36948733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 11749800 - 11749708
Alignment:
| Q |
134 |
aaaactattagtttcttattaatccataatcatgtttagta-aagttaattgtgattagcttttacatttggataagtttgttagttagttaca |
226 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||||| |||| | |||||||||||| ||| |||| | |||||||||||||||||||| |||||| |
|
|
| T |
11749800 |
aaaattattagtttttcattaatccataatcatgcttagaagaagttaattgtgtttatctttaat-tttggataagtttgttagtttgttaca |
11749708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 1418440 - 1418506
Alignment:
| Q |
151 |
attaatccataatcatgtttagtaaagttaattgtgattagcttttacatttggataagtttgttagtt |
219 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || ||||||| |||||| | ||| |||||||||||||| |
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|
| T |
1418440 |
attaatccataatcaagtttagtagagttagttttgattag-ttttacttgtgg-taagtttgttagtt |
1418506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 19796173 - 19796098
Alignment:
| Q |
151 |
attaatccataatcatgtttagtaaagttaattgtgattagcttttacatttggataagtttgttagttagttacat |
227 |
Q |
| |
|
||||||||||||||| || ||||| ||||| || |||||||| ||||| | ||| |||||||| ||||||||||||| |
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|
| T |
19796173 |
attaatccataatcaagtctagtagagttagttttgattagc-tttacttgtggttaagtttggtagttagttacat |
19796098 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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