View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11014_high_10 (Length: 525)

Name: NF11014_high_10
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11014_high_10
NF11014_high_10
[»] chr1 (3 HSPs)
chr1 (12-410)||(34411834-34412214)
chr1 (242-295)||(33233623-33233676)
chr1 (55-111)||(34409249-34409305)
[»] chr4 (7 HSPs)
chr4 (225-311)||(49061705-49061791)
chr4 (236-294)||(49059857-49059915)
chr4 (225-299)||(52733757-52733830)
chr4 (230-282)||(44378277-44378329)
chr4 (225-264)||(32898095-32898134)
chr4 (225-299)||(2328696-2328770)
chr4 (239-297)||(25608792-25608850)
[»] chr5 (1 HSPs)
chr5 (204-285)||(40056398-40056479)
[»] scaffold0444 (1 HSPs)
scaffold0444 (230-282)||(828-880)
[»] chr3 (4 HSPs)
chr3 (230-285)||(25582625-25582680)
chr3 (225-315)||(18074570-18074660)
chr3 (225-285)||(9505177-9505237)
chr3 (225-281)||(28242611-28242667)
[»] chr7 (1 HSPs)
chr7 (244-285)||(28759453-28759494)
[»] chr6 (1 HSPs)
chr6 (225-282)||(17441185-17441242)


Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 410
Target Start/End: Complemental strand, 34412214 - 34411834
Alignment:
Q  12 catcaatatacccgtcagaaagaaattaatttcatgagctagctgtctatttggactcatgttctggcttaaaatatatggttgctcgagattggagtat 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34412214 catctatatacccgtcagaaagaaattaatttcatgagctagctgtctatttggactcatgttctggcttaacatatatggttgctcgagattggagtat 34412115  T
Q  112 agcgagaggggaatgaggtttaagaatatgcattggcttgaatcaacccatagactctagcatcggcaactaatcaagttgactcaaatatggtttggaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||                  |||||||||||||    
T  34412114 agcgagaggggaatgaggtttaagaatatgcattggcttgaatcaatccatagactctagcgtcgacaa------------------atatggtttggaa 34412033  T
Q  212 ttcgatttaaccgttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttcattcactaaataaggtaaaattgaac 311  Q
    |||||||||||| ||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34412032 ttcgatttaaccattaactcgttgaatttaattcatgaattaaatgagtttaatttgggttgaaaattaagttcattcactaaataaggtaaaattgaac 34411933  T
Q  312 tataaatagttctattaatttaattcatgagttagatcgataaagacgtatttagaagtgaaagagtattttgaagaattcttaattccaattctagaa 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34411932 tataaatagttctattaatttaattcatgagttagatcgataaagacgtatttagaagtgaaagagtattttgaagaattcttaattccaattctagaa 34411834  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 33233623 - 33233676
Alignment:
Q  242 attcatgaatcaaataagttgaatttgggttgaaaattaagttcattcactaaa 295  Q
    ||||||||||||||||||||||| ||| | ||||||||||| || || ||||||    
T  33233623 attcatgaatcaaataagttgaacttgagctgaaaattaaggtcgttaactaaa 33233676  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 34409305 - 34409249
Alignment:
Q  55 tgtctatttggactcatgttctggcttaaaatatatggttgctcgagattggagtat 111  Q
    ||||||||||||||||| |||||  |||| || |||||||||| |||| ||||||||    
T  34409305 tgtctatttggactcatattctgaattaacatgtatggttgcttgagagtggagtat 34409249  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 311
Target Start/End: Original strand, 49061705 - 49061791
Alignment:
Q  225 ttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttcattcactaaataaggtaaaattgaac 311  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||| ||  || ||||| |||| |||| ||||||    
T  49061705 ttaattcgttgaatttaattcatgaatcaaataagttgaatttaagttgaaaattaaatttgttaactaattaagctaaacttgaac 49061791  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 49059857 - 49059915
Alignment:
Q  236 aatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttcattcactaa 294  Q
    ||||||||||||||| ||||||||||||||||  | ||||||||||||||||| |||||    
T  49059857 aatttaattcatgaaccaaataagttgaattttagctgaaaattaagttcattaactaa 49059915  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 52733757 - 52733830
Alignment:
Q  225 ttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttcattcactaaataag 299  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||| | |||||||||||||| || | ||||||||    
T  52733757 ttaactcgttgaatttaattcatgaaccaaatgagttgaa-ttgagctgaaaattaagttcgttaaataaataag 52733830  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 44378329 - 44378277
Alignment:
Q  230 tcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaag 282  Q
    |||||||| ||  |||||||| ||||| |||||||||||||||||||||||||    
T  44378329 tcgttgaacttggttcatgaaccaaatgagttgaatttgggttgaaaattaag 44378277  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 32898134 - 32898095
Alignment:
Q  225 ttaactcgttgaatttaattcatgaatcaaataagttgaa 264  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  32898134 ttaactcgttgaatttaatttatgagtcaaataagttgaa 32898095  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 299
Target Start/End: Complemental strand, 2328770 - 2328696
Alignment:
Q  225 ttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttcattcactaaataag 299  Q
    ||||||||||||| ||||||||| ||| |||||| ||||||||  ||||||| ||||| |  |||| ||||||||    
T  2328770 ttaactcgttgaagttaattcataaattaaataaattgaatttaagttgaaagttaagcttgttcattaaataag 2328696  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 297
Target Start/End: Complemental strand, 25608850 - 25608792
Alignment:
Q  239 ttaattcatgaatcaaataagttgaatttgggttgaaaattaagttcattcactaaata 297  Q
    ||||||||| |||||||| |||| |||||| | ||||||||||||||||| | ||||||    
T  25608850 ttaattcattaatcaaatgagtttaatttgagctgaaaattaagttcattaattaaata 25608792  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 40056398 - 40056479
Alignment:
Q  204 gtttggaattcgatttaaccgttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttc 285  Q
    ||||| |||||||||  ||  ||| ||||||||||||  |||||||| |||||||||| |||||| | ||||||||||||||    
T  40056398 gtttgaaattcgattcgacaattatctcgttgaatttggttcatgaaccaaataagttaaatttgagatgaaaattaagttc 40056479  T

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Target: scaffold0444 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 828 - 880
Alignment:
Q  230 tcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaag 282  Q
    |||||||| ||  |||||||| ||||| |||||||||||||||||||||||||    
T  828 tcgttgaacttggttcatgaaccaaatgagttgaatttgggttgaaaattaag 880  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 25582625 - 25582680
Alignment:
Q  230 tcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttc 285  Q
    ||||| ||||| |||||| |||||||| | ||||||||| ||||||||||||||||    
T  25582625 tcgttaaatttgattcataaatcaaatgaattgaatttgagttgaaaattaagttc 25582680  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 315
Target Start/End: Complemental strand, 18074660 - 18074570
Alignment:
Q  225 ttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttcattcactaaataaggtaaaattgaactata 315  Q
    |||| |||||||||||  ||||||||  |||| |||||||||||   |||||||||||||| || ||||||| || | ||||||| |||||    
T  18074660 ttaattcgttgaatttgtttcatgaactaaatgagttgaatttgaactgaaaattaagttcgttaactaaatgagctgaaattgagctata 18074570  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 9505177 - 9505237
Alignment:
Q  225 ttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttc 285  Q
    ||||||||||||| ||  |||||||| ||||| ||||||| ||| | ||||||||||||||    
T  9505177 ttaactcgttgaacttggttcatgaaccaaatgagttgaacttgagctgaaaattaagttc 9505237  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 28242667 - 28242611
Alignment:
Q  225 ttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaa 281  Q
    ||||||||||||||||  |||||||| ||||| || |||||||| | ||||||||||    
T  28242667 ttaactcgttgaatttggttcatgaaccaaatgagctgaatttgagctgaaaattaa 28242611  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 28759453 - 28759494
Alignment:
Q  244 tcatgaatcaaataagttgaatttgggttgaaaattaagttc 285  Q
    |||||||||||||  |||||||||| ||||||||||||||||    
T  28759453 tcatgaatcaaatgggttgaatttgagttgaaaattaagttc 28759494  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 17441242 - 17441185
Alignment:
Q  225 ttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaag 282  Q
    |||| |||||||| ||| |||||||| ||||| ||||||| ||| |||||||||||||    
T  17441242 ttaattcgttgaacttagttcatgaaccaaatgagttgaacttgagttgaaaattaag 17441185  T

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