View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11014_high_11 (Length: 487)
Name: NF11014_high_11
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11014_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 7e-78; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 7278285 - 7278549
Alignment:
| Q |
20 |
aaataattgtgacatcatttccatcatcttttcattgtcctccatcatccttttcaacatttttctattccctccatcttcttcctccttaa------cc |
113 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |
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| T |
7278285 |
aaataattgtgccatcatttccatcatcttctcattgtcctccatcatccttttcaacatttttctattccctccatcttcttccttataacaattctcc |
7278384 |
T |
|
| Q |
114 |
tcctcaaatccattt---------------tcttctttcacatccacactttcctcaattccttcctcccccaaacttgttcccacactctcttccttct |
198 |
Q |
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||||||||| ||||| |||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7278385 |
tcctcaaattcatttccaattctaccctcctcttctttcacatctacactttccttaattccttcctccaccaaacttgttcccacactctcttccttct |
7278484 |
T |
|
| Q |
199 |
cttctacctccatcttcttcacatcctcattgctctcctcattccccaaagcttcaaatttttca |
263 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7278485 |
cttctacctccatcttcttcacatcctcattgttctcctcattccccaaagcttcaaatttttca |
7278549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 7375554 - 7375290
Alignment:
| Q |
20 |
aaataattgtgacatcatttccatcatcttttcattgtcctccatcatccttttcaacatttttctattccctccatcttcttcctccttaa------cc |
113 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |
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| T |
7375554 |
aaataattgtgccatcatttccatcatcttctcattgtcctccatcatccttttcaacatttttctattccctccatcttcttccttataacaattctcc |
7375455 |
T |
|
| Q |
114 |
tcctcaaatccattt---------------tcttctttcacatccacactttcctcaattccttcctcccccaaacttgttcccacactctcttccttct |
198 |
Q |
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||||||||| ||||| |||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7375454 |
tcctcaaattcatttccaattctaccctcctcttctttcacatctacactttccttaattccttcctccaccaaacttgttcccacactctcttccttct |
7375355 |
T |
|
| Q |
199 |
cttctacctccatcttcttcacatcctcattgctctcctcattccccaaagcttcaaatttttca |
263 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7375354 |
cttctacctccatcttcttcacatcctcattgttctcctcattccccaaagcttcaaatttttca |
7375290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 322 - 476
Target Start/End: Original strand, 7278608 - 7278765
Alignment:
| Q |
322 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaattatattct---ttcacacatttaccctcgctaccatcctc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
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| T |
7278608 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgctaccatcctc |
7278707 |
T |
|
| Q |
419 |
attcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccctctct |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278708 |
attcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccctctct |
7278765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 322 - 476
Target Start/End: Complemental strand, 7375231 - 7375074
Alignment:
| Q |
322 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaattatattctt---tcacacatttaccctcgctaccatcctc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| |
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| T |
7375231 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgctaccatcctc |
7375132 |
T |
|
| Q |
419 |
attcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccctctct |
476 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7375131 |
attcatcaaaggtcccattttttcacctccctcattcttctcttcataccccctctct |
7375074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 470
Target Start/End: Original strand, 7278789 - 7278849
Alignment:
| Q |
410 |
accatcctcattcatcaaaggtcccattttttcacctccctcattcttctcttcacacccc |
470 |
Q |
| |
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|||||||||||||| ||||| | | ||||| | ||| |||||||||| ||||||||||||| |
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| T |
7278789 |
accatcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacacccc |
7278849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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