View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11014_high_22 (Length: 361)
Name: NF11014_high_22
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11014_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 29319153 - 29318819
Alignment:
| Q |
19 |
atttgcacggcatctaagagaaacctctcagttttatcttcaagatcttcaaacttcaatttcatgcatgcaagattttcaatcaaagcttaactcttta |
118 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29319153 |
atttgcacggcatctaagagaaacctctcaatttaatcttcaagatcttcaaacttcaatttcatgcatgcaagattttcaatcaaagcttaactcttta |
29319054 |
T |
|
| Q |
119 |
tcactttacaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatatgtgcaggtattgaaactgttcaagattggaatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29319053 |
tcactttacaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatatgtgcaggtattgaaactgttcaagattggaatg |
29318954 |
T |
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| Q |
219 |
agaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatgcgctttgtgtgttgttgctggattagaggttaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| |
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| T |
29318953 |
agaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatgcgatgtgtgtgttgctgctggattagaggttaa |
29318854 |
T |
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| Q |
319 |
gcagaagcttgtttcagttagtggcaattcttctc |
353 |
Q |
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| | |||||||||||| |||||||||||||||||| |
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| T |
29318853 |
ggataagcttgtttcaattagtggcaattcttctc |
29318819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 717332 - 717655
Alignment:
| Q |
19 |
atttgcacggcatctaagagaaacctctcagttttatcttcaagatcttcaaacttcaatttcatgcatgcaagattttcaatcaaagcttaactcttta |
118 |
Q |
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|||||||| |||||| | |||||| || ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
717332 |
atttgcacagcatcttaaagaaacttcacagttcaatcttcaagatcttcaaacttcaaattcatgcatgcaagattttcaatcaaagcttaactcttta |
717431 |
T |
|
| Q |
119 |
tcactttacaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatatgtgcaggtattgaaactgttcaagattggaatg |
218 |
Q |
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|||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
717432 |
tcactttacaacaacttggtcaactcttgttttgaccctcttcaatttgttatctctcgtaacatatgtgcaggtattgaaactgttcatgattggaatg |
717531 |
T |
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| Q |
219 |
agaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatgcgctttgtgtgttgttgctggattagaggttaa |
318 |
Q |
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|||| || |||||||||||| || | || |||||||||||||||||||||||| ||||||||||||| | | || |||| |||||||||| ||||||| |
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| T |
717532 |
agaaagtgggtcagaattcatctttgaatactgcttgtaaaccagatctcactcatctttctcaatgtgatgcatgcgttgctgctggattacaggttaa |
717631 |
T |
|
| Q |
319 |
gcagaagcttgtttcagttagtgg |
342 |
Q |
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|||||||||||||||||||||||| |
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| T |
717632 |
gcagaagcttgtttcagttagtgg |
717655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 208
Target Start/End: Original strand, 26942185 - 26942214
Alignment:
| Q |
179 |
aacatatgtgcaggtattgaaactgttcaa |
208 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
26942185 |
aacatatgtgcaggtattgaaactgttcaa |
26942214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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