View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11014_high_25 (Length: 302)
Name: NF11014_high_25
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11014_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 2901472 - 2901746
Alignment:
| Q |
11 |
cacagaaattacttcttatacttagtgagatttgtgcgacgccaagttagaaggatactttcggaaaaaacagtttttatgcagcctggaagtatacttt |
110 |
Q |
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| T |
2901472 |
cacagaaattacttcttatacttagtgagatttgtgcgacgccaagttagaaggatactttcggaaaaaacagtttttatgcaacctggaagtatacttt |
2901571 |
T |
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| Q |
111 |
cgaagagnnnnnnnnn-cagtccgaaagtatatttccggacacatgtgtggtttttatagaaatgtgacataattaagaagctcgcaattagatatgagg |
209 |
Q |
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| T |
2901572 |
cgaagagttttttttttccgtccgaaagtatatttccggacacatgtgtggtttttatagaaatgtgacataataaagaagctcgcaattagatatgagg |
2901671 |
T |
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| Q |
210 |
gataagttagataggnnnnnnngacaaggaatttgtgtagaaaatgactaaccataacgtgatccaacgccttgg |
284 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2901672 |
gataagttagataggaaaaaaagacaaggaatttgtgtagaaaatgactaaccataacgtgatccaacgccttgg |
2901746 |
T |
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