View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11014_high_27 (Length: 292)

Name: NF11014_high_27
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11014_high_27
NF11014_high_27
[»] chr3 (1 HSPs)
chr3 (18-287)||(30726538-30726807)
[»] chr5 (1 HSPs)
chr5 (55-226)||(34522528-34522702)
[»] chr4 (1 HSPs)
chr4 (55-219)||(6889811-6889978)
[»] chr1 (3 HSPs)
chr1 (142-203)||(30978506-30978567)
chr1 (163-210)||(33406401-33406448)
chr1 (158-206)||(30956660-30956708)
[»] chr2 (1 HSPs)
chr2 (108-206)||(31844524-31844622)
[»] chr7 (1 HSPs)
chr7 (163-219)||(23010879-23010935)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 30726807 - 30726538
Alignment:
Q  18 agtagtaccatcatttggaaccatcaacaataggtcttgggaggaaaaagcttttgcagaagatgcagctaggatacttggtggatgtatatggcctcca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30726807 agtagtaccatcatttggaaccatcaacaataggtcttgggaggaaaaagcttttgcagaagatgcagctaggatacttggtggatgtatatggcctcca 30726708  T
Q  118 agatcttactcatgtcacttctgtaaaagagagtttaggtctgctcaagctttaggtggtcacatgaatgttcatagaagagatagagctaagctcaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30726707 agatcttactcatgtcacttctgtaaaagagagtttaggtctgctcaagctttaggtggtcacatgaatgttcatagaagagatagagctaagctcaaac 30726608  T
Q  218 aaagtcttaaccaccataatgaattagaacttcattctcatcacaaaaatcattgtaagttcttctctct 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30726607 aaagtcttaaccaccataatgaattagaacttcattctcatcacaaaaatcattgtaagttcttcactct 30726538  T

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Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 55 - 226
Target Start/End: Original strand, 34522528 - 34522702
Alignment:
Q  55 tgggaggaaaaagcttttgcagaagatgcagctagga---tacttggtggatgtatatggcctccaagatcttactcatgtcacttctgtaaaagagagt 151  Q
    ||||| ||||| |||||||||||||||||||||||||   ||||   |||  | || ||||| ||||||| ||| |||||| |||| |||||||||||||    
T  34522528 tgggaagaaaaggcttttgcagaagatgcagctaggaatatactgaatggtagcatgtggccaccaagattttattcatgtaacttttgtaaaagagagt 34522627  T
Q  152 ttaggtctgctcaagctttaggtggtcacatgaatgttcatagaagagatagagctaagctcaaacaaagtctta 226  Q
    ||||||||||||||||| | ||||||||||||||| ||||||| ||||||||||||| ||||||||||| |||||    
T  34522628 ttaggtctgctcaagctcttggtggtcacatgaatattcataggagagatagagctaggctcaaacaaaatctta 34522702  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 6889978 - 6889811
Alignment:
Q  55 tgggaggaaaaagcttttgcagaagatgcagct--aggat-acttggtggatgtatatggcctccaagatcttactcatgtcacttctgtaaaagagagt 151  Q
    ||||| ||| |||||||||| ||||||||||||  ||| | |||||| |||||||||||||| |||||||| || || |||  ||| |||| ||||||||    
T  6889978 tgggaagaacaagcttttgctgaagatgcagctgcagggtcacttggaggatgtatatggccaccaagatcatattcttgtagcttttgtagaagagagt 6889879  T
Q  152 ttaggtctgctcaagctttaggtggtcacatgaatgttcatagaagagatagagctaagctcaaacaa 219  Q
    ||||||| || ||||| |||||||| || |||||||||||||||| ||||||||| |  |||||||||    
T  6889878 ttaggtcagcacaagcattaggtggacatatgaatgttcatagaaaagatagagcaagactcaaacaa 6889811  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 30978567 - 30978506
Alignment:
Q  142 aaaagagagtttaggtctgctcaagctttaggtggtcacatgaatgttcatagaagagatag 203  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||    
T  30978567 aaaagagagtttaggtcagctcaagctttaggtggacatatgaatgtccatagaagagatag 30978506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 33406401 - 33406448
Alignment:
Q  163 caagctttaggtggtcacatgaatgttcatagaagagatagagctaag 210  Q
    |||||||||||||||||||||||| ||||||| | |||||||||||||    
T  33406401 caagctttaggtggtcacatgaatattcataggaaagatagagctaag 33406448  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 30956708 - 30956660
Alignment:
Q  158 ctgctcaagctttaggtggtcacatgaatgttcatagaagagatagagc 206  Q
    ||||||||||||||||||| ||||||||  ||||||||| |||||||||    
T  30956708 ctgctcaagctttaggtggacacatgaacattcatagaaaagatagagc 30956660  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 31844622 - 31844524
Alignment:
Q  108 atggcctccaagatcttactcatgtcacttctgtaaaagagagtttaggtctgctcaagctttaggtggtcacatgaatgttcatagaagagatagagc 206  Q
    |||||| |||||||| ||| |||||  ||| |||| || ||||||||  || ||||||||  | || ||||||||||||||||||||||| ||||||||    
T  31844622 atggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttcatagaagggatagagc 31844524  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 23010935 - 23010879
Alignment:
Q  163 caagctttaggtggtcacatgaatgttcatagaagagatagagctaagctcaaacaa 219  Q
    ||||| ||||| || ||||||||| | ||||||||||||||||| ||||||||||||    
T  23010935 caagcattaggaggccacatgaatatccatagaagagatagagccaagctcaaacaa 23010879  T

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