View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11014_high_31 (Length: 243)
Name: NF11014_high_31
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11014_high_31 |
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| [»] chr3 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 57 - 243
Target Start/End: Original strand, 42518924 - 42519110
Alignment:
| Q |
57 |
tatttttaatccaagtgtttattcattaaaaattaaccacataatatttttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacat |
156 |
Q |
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| T |
42518924 |
tatttttaatctaagtgtttattcattaaaaattaaccacataatatttttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacat |
42519023 |
T |
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| Q |
157 |
aaagcatccacactttttcagcgaatccattcatggcagctccggcgagaaaaagaacaccaccagagagcatggtaagacgtcttc |
243 |
Q |
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| T |
42519024 |
aaagcatccacactttttcagcgaatccattcatggcagctccggcgagaaaaagaacaccaccagagagcatggtaagacgtcttc |
42519110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 62 - 243
Target Start/End: Original strand, 1240709 - 1240889
Alignment:
| Q |
62 |
ttaatccaagtgtttattcattaaaaattaaccacataatatttttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacataaagc |
161 |
Q |
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| T |
1240709 |
ttaatctaagagtttattcattaagaattgaccacatgtt-tttttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacataaagc |
1240807 |
T |
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| Q |
162 |
atccacactttttcagcgaatccattcatggcagctccggcgagaaaaagaacaccaccagagagcatggtaagacgtcttc |
243 |
Q |
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| T |
1240808 |
atccacactttttcagcgaatccattcatagcagctccagcgagaaaaagaacaccaccagagagcatggtaagatgtcttc |
1240889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 42551112 - 42550975
Alignment:
| Q |
106 |
ttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacataaagcatccacactttttcagcgaatccattcatggcagctccggcgag |
205 |
Q |
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| T |
42551112 |
ttacctgaatagcacatcctattccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaag |
42551013 |
T |
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| Q |
206 |
aaaaagaacaccaccagagagcatggtaagacgtcttc |
243 |
Q |
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| T |
42551012 |
aaaaagcacacctccagaaatcatggtgagacgccttc |
42550975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 62 - 243
Target Start/End: Original strand, 41972342 - 41972522
Alignment:
| Q |
62 |
ttaatccaagtgtttattcattaaaaattaaccacataatatttttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacataaagc |
161 |
Q |
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| T |
41972342 |
ttaatctaagagtttattcattaagaattaaccacatgtt-tttttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacataaagc |
41972440 |
T |
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| Q |
162 |
atccacactttttcagcgaatccattcatggcagctccggcgagaaaaagaacaccaccagagagcatggtaagacgtcttc |
243 |
Q |
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| T |
41972441 |
atccacactttttcagcgaatccattcatagcagctccagcgagaaaaagaacaccaccagagagcatggtaagacgtcttc |
41972522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 18235185 - 18235322
Alignment:
| Q |
106 |
ttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacataaagcatccacactttttcagcgaatccattcatggcagctccggcgag |
205 |
Q |
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| T |
18235185 |
ttacctgattagcacatccaataccgaatccaagtaacatacgaccaacaatgagcatccaaacctcttgagcaaagccattcatggcagcaccagcaag |
18235284 |
T |
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| Q |
206 |
aaaaagaacaccaccagagagcatggtaagacgtcttc |
243 |
Q |
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| T |
18235285 |
aaaaagaacaccaccagaaagcatggtgatacgtcttc |
18235322 |
T |
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