View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11014_high_5 (Length: 705)

Name: NF11014_high_5
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11014_high_5
NF11014_high_5
[»] chr4 (1 HSPs)
chr4 (20-688)||(30715281-30715949)


Alignment Details
Target: chr4 (Bit Score: 641; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 20 - 688
Target Start/End: Complemental strand, 30715949 - 30715281
Alignment:
Q  20 ggccaccgcttcaaaatccattgcagcctcagaaagtaggatcttacacgttccttctcaccttgatgaatccccataagttctgaccttaactcctcaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30715949 ggccaccgcttcaaaatccattgcagcctcagaaagtaggatcttacacgttccttctcaccttgatgaatccccataagttctgaccttaactcctcaa 30715850  T
Q  120 cgggttcaatttcgtaataggcttgtaaaaacgacaacttgatttcatcccatgaaagagaaatgtaataaggctcgatgttgaggtcgtaccatagtgc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30715849 cgggttcaatttcgtaataggcttgtaaaaacgacaacttgatttcatcccatgaaagagaaatgtaataaggctcgatgttgaggtcgtaccatagtgc 30715750  T
Q  220 agattcttcttcaagtgtgacagggaagatcttcttttgcatttcaacggaggatgcattgtttgctctacatactttgttgaaacgactcaaatgggtt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30715749 agattcttcttcaagtgtgacagggaagatcttcttttgcatttcaacggaggatgcattgtttgctctacatactttgttgaaacgactcaaatgggtt 30715650  T
Q  320 attggggattcgtttggagtgccatgaaaaattggtaaaggagcgattggtatgtatgaagatgcattcatgggttgtgtgggatttgggacattataag 419  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30715649 attggggattcgtttggagtgccacgaaaaattggtaaaggagcgatttgtatgtatgaagatgcattcatgggttgtgtgggatttcggacattataag 30715550  T
Q  420 aagaaactgaagggctttctggaacattgccaatgtgtgcttcttgtgagaaagatggtttaccatgtggtgcattggacaaggattcagaaacatcatc 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30715549 aagaaactgaagggctttctggaacattgccaatgtgtgcttcttgtgagaaagatggtttaccatgtggtgcattggacaaggattcagaaacatcatc 30715450  T
Q  520 gtcatcgtcatcattgtcttcttcctctttttcggtttcatcttcaaattgtcggtgttgatcctcttgagatttagaatccacatcgtttgcatcagta 619  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  30715449 gtcatcgtcatcattgtcttcttcctcttcttcggtttcatcttcaaactgtcggtgttgatcctcttgagattcagaatccacatcgtctgcatcagta 30715350  T
Q  620 ctattattatcgttgtcctcgtctttgtattcttctgataacttttgttttggaattctattatgatgt 688  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30715349 ctattattatcgttgtcctcgtctttgtattcttctgataacttttgttttggaattctattatgatgt 30715281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University