View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11014_high_7 (Length: 604)

Name: NF11014_high_7
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11014_high_7
NF11014_high_7
[»] chr3 (2 HSPs)
chr3 (17-590)||(50501946-50502519)
chr3 (186-220)||(35480462-35480496)
[»] chr5 (1 HSPs)
chr5 (165-217)||(17868108-17868161)
[»] chr4 (2 HSPs)
chr4 (165-217)||(36741033-36741086)
chr4 (93-129)||(7148773-7148809)
[»] scaffold0027 (1 HSPs)
scaffold0027 (93-129)||(142340-142376)
[»] chr8 (2 HSPs)
chr8 (93-129)||(28879059-28879095)
chr8 (165-212)||(28879184-28879232)
[»] chr7 (3 HSPs)
chr7 (93-129)||(1054117-1054153)
chr7 (93-129)||(33288148-33288184)
chr7 (93-129)||(47511044-47511080)
[»] chr6 (1 HSPs)
chr6 (93-129)||(10054382-10054418)
[»] chr2 (1 HSPs)
chr2 (165-212)||(8832586-8832634)


Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 17 - 590
Target Start/End: Original strand, 50501946 - 50502519
Alignment:
Q  17 acaaacaaatgataaaaatattgaagccagaaagcacacacataacttgggcctgtgggannnnnnnnnnnnnnnngagcttatgcaaattaatcagctt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||    
T  50501946 acaaacaaatgataaaaatattgaagccagaaagcacacacataacttgggcctgtgggatttttatttttattttgagcttatgcaaattaatcagctt 50502045  T
Q  117 ttatgtattattcttcacgagcttgtcaaggtagcataagaaaatatgatttacataagctagttttcaaagctaaaaaataaggcaatccaaacgagcc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50502046 ttatgtattattcttcacgagcttgtcaaggtagcataagaaaatatgatttacataagctagttttcaaagctaaaaaataaggcaatccaaacgagcc 50502145  T
Q  217 cctagcctaaaatcacaaatggaatgtcattacctagaaactcatagatggaattatgttaaagaaatattggatcgatcagaatgggaaaaaatataaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50502146 cctagcctaaaatcacaaatggaatgtcattacctagaaactcatagatggaattatgttaaagaaatattggatcgatcagaatgggaaaaaatataaa 50502245  T
Q  317 cttattataggctagagaactagtttaagtttagaattgtatagggaaaaaatagttttacctgcatagccagtttttccttttcagggcctcctcgaac 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50502246 cttattataggctagagaactagtttaagtttagaattgtatagggaaaaaatagttttacctgcatagccagtttttccttttcagggcctcctcgaac 50502345  T
Q  417 gcaataagcaactccccactgaaaacaaaaatgatagtaagaaatcaaatataaaaataatcacttcaagacaagataaagcatcacagaaatcaaatat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50502346 gcaataagcaactccccactgaaaacaaaaatgatagtaagaaatcaaatataaaaataatcacttcaagacaagataaagcatcacagaaatcaaatat 50502445  T
Q  517 aaacttacgcaaatttccccttctttctcctccaaagtgcaagttcttgcagggttttcaggtgttcctctgtg 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50502446 aaacttacgcaaatttccccttctttctcctccaaagtgcaagttcttgcagggttttcaggtgttcctctgtg 50502519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 35480462 - 35480496
Alignment:
Q  186 aagctaaaaaataaggcaatccaaacgagccccta 220  Q
    ||||||||||||||| |||||||||||||||||||    
T  35480462 aagctaaaaaataagtcaatccaaacgagccccta 35480496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 17868161 - 17868108
Alignment:
Q  165 atttacataagctagttttca-aagctaaaaaataaggcaatccaaacgagccc 217  Q
    |||| ||||||||| ||| || ||||||||||||||| ||||||||||||||||    
T  17868161 atttgcataagctattttccataagctaaaaaataagccaatccaaacgagccc 17868108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 36741033 - 36741086
Alignment:
Q  165 atttacataagctagttttca-aagctaaaaaataaggcaatccaaacgagccc 217  Q
    |||| ||||||||| |||||| ||||||||||||||| |||||||||| |||||    
T  36741033 atttgcataagctatttttcataagctaaaaaataagccaatccaaacaagccc 36741086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 7148773 - 7148809
Alignment:
Q  93 gagcttatgcaaattaatcagcttttatgtattattc 129  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  7148773 gagcttatgcaaataaataagcttttatgtattattc 7148809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 142340 - 142376
Alignment:
Q  93 gagcttatgcaaattaatcagcttttatgtattattc 129  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  142340 gagcttatgcaaataaatgagcttttatgtattattc 142376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 28879059 - 28879095
Alignment:
Q  93 gagcttatgcaaattaatcagcttttatgtattattc 129  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  28879059 gagcttatgcaaataaataagcttttatgtattattc 28879095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 28879184 - 28879232
Alignment:
Q  165 atttacataagctagttttca-aagctaaaaaataaggcaatccaaacg 212  Q
    |||| ||||||||| |||||| ||||||||||||||| |||||||||||    
T  28879184 atttgcataagctatttttcataagctaaaaaataagtcaatccaaacg 28879232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 1054153 - 1054117
Alignment:
Q  93 gagcttatgcaaattaatcagcttttatgtattattc 129  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  1054153 gagcttatgcaaataaataagcttttatgtattattc 1054117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 33288184 - 33288148
Alignment:
Q  93 gagcttatgcaaattaatcagcttttatgtattattc 129  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  33288184 gagcttatgcaaataaataagcttttatgtattattc 33288148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 47511044 - 47511080
Alignment:
Q  93 gagcttatgcaaattaatcagcttttatgtattattc 129  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  47511044 gagcttatgcaaataaataagcttttatgtattattc 47511080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 10054382 - 10054418
Alignment:
Q  93 gagcttatgcaaattaatcagcttttatgtattattc 129  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  10054382 gagcttatgcaaataaataagcttttatgtattattc 10054418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 8832586 - 8832634
Alignment:
Q  165 atttacataagctagttttca-aagctaaaaaataaggcaatccaaacg 212  Q
    |||| ||||||||| |||||| ||||||||||||||| |||||||||||    
T  8832586 atttgcataagctatttttcataagctaaaaaataagtcaatccaaacg 8832634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University