View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11014_low_13 (Length: 456)

Name: NF11014_low_13
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11014_low_13
NF11014_low_13
[»] chr1 (6 HSPs)
chr1 (8-437)||(10549380-10549807)
chr1 (122-415)||(5960076-5960372)
chr1 (57-410)||(16765937-16766285)
chr1 (129-400)||(45909068-45909341)
chr1 (136-290)||(44711317-44711473)
chr1 (129-260)||(33803612-33803743)
[»] chr5 (7 HSPs)
chr5 (115-431)||(31043977-31044294)
chr5 (56-431)||(31059268-31059638)
chr5 (124-411)||(31048642-31048929)
chr5 (134-260)||(25762016-25762142)
chr5 (129-290)||(20234852-20235015)
chr5 (129-290)||(34832140-34832303)
chr5 (126-398)||(11633185-11633456)
[»] chr2 (7 HSPs)
chr2 (124-233)||(10925990-10926099)
chr2 (134-290)||(30213737-30213895)
chr2 (129-290)||(29810165-29810328)
chr2 (124-215)||(26264667-26264758)
chr2 (262-437)||(26264486-26264660)
chr2 (129-290)||(17310717-17310880)
chr2 (308-399)||(21198977-21199068)
[»] chr8 (3 HSPs)
chr8 (129-260)||(23255032-23255163)
chr8 (134-290)||(756180-756338)
chr8 (304-412)||(755780-755888)
[»] chr7 (6 HSPs)
chr7 (129-290)||(19217388-19217551)
chr7 (139-290)||(41255691-41255844)
chr7 (134-260)||(15892266-15892392)
chr7 (302-402)||(25010867-25010967)
chr7 (124-179)||(25010687-25010742)
chr7 (282-403)||(2273018-2273139)
[»] chr3 (4 HSPs)
chr3 (70-185)||(25478838-25478947)
chr3 (136-290)||(48094950-48095106)
chr3 (124-240)||(5158465-5158581)
chr3 (129-290)||(52970661-52970823)


Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 8 - 437
Target Start/End: Complemental strand, 10549807 - 10549380
Alignment:
Q  8 cagagacagaatgcaaaattcttgacagaacctaacacggttttaataaaaaacaccttaagcaaatctcattctgataacagagagatgtcttccttcc 107  Q
    |||||||||||||||||||||||| |||||| ||||||||||||  ||||| |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  10549807 cagagacagaatgcaaaattcttggcagaacttaacacggtttttgtaaaatacacctgaagcaaatctcattctggtaacagagagatgtcttccttcc 10549708  T
Q  108 tatccttcatatatatatcaccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaa 207  Q
    ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  10549707 tatccttcatatatat--caccctcatactcgaacctcaacatcttccagtgagtgtggatttcatccaaacggatggggattttgttcttgatcttcaa 10549610  T
Q  208 tgcaatcgcacccgcacatggcaatccgtaagtgatcgaactcaaacaaccacctggatttatccgtaccaagttcaactgctcaatcaacatcgtctac 307  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  10549609 tgcaatcgcacacacacatggcaatccgtaagtgatcgaactcaaacaaccacctggatttatccgtaccaagtccaactgctcaatcagcatcgtctac 10549510  T
Q  308 gagataatgcaaatatttccttaatatgtttcgaatcaacctaaaccacaaaagctttactttgaatctctgttcaagcatgataatgctcgtctggaag 407  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10549509 gagataatgcaaatctttccttaatatgtttcgaatcaacctagaccacaaaagctttcctttgaatctctgttcaagcatgataatgctcgtctggaag 10549410  T
Q  408 gaagcgtgcagctgagtatgttgtagctct 437  Q
    ||||||||||||||||||||||||||||||    
T  10549409 gaagcgtgcagctgagtatgttgtagctct 10549380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 122 - 415
Target Start/End: Complemental strand, 5960372 - 5960076
Alignment:
Q  122 atatcaccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggtttt-gttcttgatcttcaatgcaatcgcaccc 220  Q
    |||||||||||||| |||||||||||||||||  ||||||| ||||||| |||||||||||||||| |||| | |||||||||||||||||||||||| |    
T  5960372 atatcaccctcatattcgaacctcaacctcttttagtgagtgtggattttatccaaacggatggggttttttgctcttgatcttcaatgcaatcgcacac 5960273  T
Q  221 gcacatggcaatccgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgctcaatcaacatcgtctacgagataatgca 318  Q
    ||||||||||||| | |||||||| || ||||||||||||  || ||||||||| |||| |   ||||||||| |||| | || ||| ||||||||||||    
T  5960272 gcacatggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatccataccgacaccaactgctcgatcagcctcatctgcgagataatgca 5960173  T
Q  319 aatatttccttaatatgtttcgaatcaacctaaaccacaaaagctttactttgaatctctgttcaagcatgataatgctcgtctggaaggaagcgtg 415  Q
    ||   || ||| |||||||||||||||||||| ||||||| |  |||  ||||||||| |||||||||||||||||||||||||  |||||||||||    
T  5960172 aagcgtttcttgatatgtttcgaatcaacctagaccacaacaattttcttttgaatctatgttcaagcatgataatgctcgtctaaaaggaagcgtg 5960076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 57 - 410
Target Start/End: Original strand, 16765937 - 16766285
Alignment:
Q  57 aaaacaccttaagcaaatctcattctgataacagagagatgtcttccttcctatccttcatatatatatcaccctcatactcgaacctcaacctcttcca 156  Q
    |||| |||| |||||||||| |||| | || |||||||||||||||||||||||||||||| |      || |||||||||  ||||||||||||||  |    
T  16765937 aaaatacctgaagcaaatcttattccggtagcagagagatgtcttccttcctatccttcatgt------caacctcatacttaaacctcaacctctttta 16766030  T
Q  157 gtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatccgtaagtgatcgaactcaaacaa 256  Q
    || ||| || |||||||||||||| |||| | | |||||||||||||||||||||||| | | |||||| | ||||||| ||||||||  ||||||||||    
T  16766031 gtaagtgtgaatttcatccaaacgaatggtgatgttgttcttgatcttcaatgcaatcac-cacgcacacgacaatccgaaagtgatctgactcaaacaa 16766129  T
Q  257 cc--acctggatttatccgtaccaagttcaactgctcaatcaacatcgtctacgagataatgcaaatatttccttaatatgtttcgaatcaacctaaacc 354  Q
    ||  |  ||||||||||||| || |  || | ||||| |||  | |||||| ||| ||||||||||  ||| ||| |||||||| |||||||  || |||    
T  16766130 ccaaatttggatttatccgttccgatatcgagtgctcgatcggcctcgtctgcgatataatgcaaaacttttcttgatatgttttgaatcaagttagacc 16766229  T
Q  355 acaaaagctttactttgaatctctgttcaagcatgataatgctcgtctggaaggaa 410  Q
    | ||| ||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  16766230 ataaacgctttccattgaatctatgttcaagcatgataatgctcgtctggaaggaa 16766285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 129 - 400
Target Start/End: Original strand, 45909068 - 45909341
Alignment:
Q  129 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 228  Q
    |||| |||||||||||||||||||||||||| || || ||||||||||||| || || ||||  ||| || ||||||||  |||||  || |||||| ||    
T  45909068 cctcgtactcgaacctcaacctcttccagtgggtgtgaatttcatccaaactgagggcggttccgttttttatcttcaaatcaatcatacacgcacacgg 45909167  T
Q  229 caatccgtaagtgatcgaactcaaacaacc--acctggatttatccgtaccaagttcaactgctcaatcaacatcgtctacgagataatgcaaatatttc 326  Q
     ||||||||||||||| |||||||||||||  |  | |||||||||||||||| ||||| ||||  ||     ||  ||||||||| ||| |||  || |    
T  45909168 taatccgtaagtgatcaaactcaaacaaccatattttgatttatccgtaccaatttcaagtgctttattgtactccactacgagatgatgtaaagcttcc 45909267  T
Q  327 cttaatatgtttcgaatcaacctaaaccacaaaagctttactttgaatctctgttcaagcatgataatgctcgt 400  Q
    ||| | ||||| ||||||||  || ||||||| | |||| ||||||| || ||||||||||| || ||||||||    
T  45909268 cttgaaatgttccgaatcaaattagaccacaacaactttcctttgaacctatgttcaagcattattatgctcgt 45909341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 290
Target Start/End: Original strand, 44711317 - 44711473
Alignment:
Q  136 ctcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatccg 235  Q
    ||||||||||||||||||| |||| || || |||||||||||||||| || ||||  ||| || ||||||||  |||||  ||  |||||  | ||||||    
T  44711317 ctcgaacctcaacctcttctagtgggtgtgaatttcatccaaacggagggcggttccgttttttatcttcaaaccaatcatacatgcacacagtaatccg 44711416  T
Q  236 taagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 290  Q
    ||||||||| |||||||||||||||   | |||||||||||||||| ||||| ||||    
T  44711417 taagtgatcaaactcaaacaaccacattttgatttatccgtaccaatttcaagtgct 44711473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 33803743 - 33803612
Alignment:
Q  129 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 228  Q
    |||| ||||||||| |||||||||||  ||| || || ||||| |||||||||| |  ||||  |||||||||||||||  |||||  ||  ||||| ||    
T  33803743 cctcgtactcgaacttcaacctcttctggtgggtgtgaatttcttccaaacggaagttggttccgttcttgatcttcaaaccaatcatacatgcacacgg 33803644  T
Q  229 caatccgtaagtgatcgaactcaaacaaccac 260  Q
     ||| ||||||||||| |||||||||||||||    
T  33803643 taattcgtaagtgatcaaactcaaacaaccac 33803612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 115 - 431
Target Start/End: Original strand, 31043977 - 31044294
Alignment:
Q  115 catatatatatcaccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatc 214  Q
    |||| ||| ||||||||| ||||||||| |||||||| || ||||||| ||||| ||||||||||  |||||||| |||||||||||||||| |||||||    
T  31043977 cataaatagatcaccctcttactcgaacttcaacctcatctagtgagtgtggatgtcatccaaacaaatgggggtgttgttcttgatcttcattgcaatc 31044076  T
Q  215 gcacccgcacatggcaatccgtaagtgatcgaactcaaacaac--cacctggatttatccgtaccaagttcaactgctcaatcaacatcgtctacgagat 312  Q
    | || ||||||||| |||| ||||| |||  || | |||||||  ||| ||||||||||||||| |    ||||| ||| |||||| |||  | ||||||    
T  31044077 gtacacgcacatggaaatctgtaagcgatgaaaattaaacaaccacacttggatttatccgtactacaaccaactactcgatcaacctcgattgcgagat 31044176  T
Q  313 aatgcaaatatttccttaatatgtttcgaatcaacctaaaccacaaaagctttactttgaatctctgttcaagcatgataatgctcgtctggaaggaagc 412  Q
    ||||||||   ||||||  |||||||||||||||||| | |||||| | |||| ||||||| || |||||||||||||| |||||||||| |||||||||    
T  31044177 aatgcaaagcgttccttggtatgtttcgaatcaacct-agccacaacaactttcctttgaacctatgttcaagcatgatcatgctcgtctagaaggaagc 31044275  T
Q  413 gtgcagctgagtatgttgt 431  Q
     || |  ||||||||||||    
T  31044276 atgtatttgagtatgttgt 31044294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 56 - 431
Target Start/End: Original strand, 31059268 - 31059638
Alignment:
Q  56 aaaaacaccttaagcaaatctcattctgataacagagagatgtcttccttcctatccttcatatatatatcaccctcatactcgaacctcaacctcttcc 155  Q
    ||||| |||| |||||||||| ||| || ||||| |||||||||| ||||| ||||||| | ||      ||||||| |||||||||||||||||| ||     
T  31059268 aaaaatacctgaagcaaatcttattatggtaacatagagatgtctgccttcttatccttaagat------caccctcttactcgaacctcaacctcatct 31059361  T
Q  156 agtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatccgtaagtgatcgaactcaaaca 255  Q
    ||||||| ||||| ||||||||||  |||||||| |||||||||||||||| |||||| | || ||||||||| |||| ||||| |||  || | |||||    
T  31059362 agtgagtgtggatgtcatccaaacaaatgggggtgttgttcttgatcttcattgcaattgtacacgcacatggaaatctgtaagcgatgaaaattaaaca 31059461  T
Q  256 ac--cacctggatttatccgtaccaagttcaactgctcaatcaacatcgtctacgagataatgcaaatatttccttaatatgtttcgaatcaacctaaac 353  Q
    ||  ||| || |||||||||||| |    || || ||  |||||| |||  | | ||||||||||||   ||||||  ||||||| |||||||||| | |    
T  31059462 accacacttgtatttatccgtactacaaccacctacttgatcaacctcgattgcaagataatgcaaagcgttccttggtatgttttgaatcaacct-agc 31059560  T
Q  354 cacaaaagctttactttgaatctctgttcaagcatgataatgctcgtctggaaggaagcgtgcagctgagtatgttgt 431  Q
    ||||| | |||| ||||||| || |||||||||||||| |||||||||||||||||||| || |  ||||||||||||    
T  31059561 cacaacaactttcctttgaacctatgttcaagcatgatcatgctcgtctggaaggaagcatgtatttgagtatgttgt 31059638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 124 - 411
Target Start/End: Original strand, 31048642 - 31048929
Alignment:
Q  124 atcaccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgca 223  Q
    ||||||||| ||||| |||||||||||| || ||||||| ||||| ||||||||||  |||||||| ||| |||||||||||| |||||||  |  ||||    
T  31048642 atcaccctcttactccaacctcaacctcatctagtgagtgtggatgtcatccaaacaaatgggggtgttg-tcttgatcttcattgcaatcataaacgca 31048740  T
Q  224 catggcaatccgtaagtgatcgaactcaaacaac--cacctggatttatccgtaccaagttcaactgctcaatcaacatcgtctacgagataatgcaaat 321  Q
    ||||| |||  ||||| |||  || | |||||||  ||| ||||||||||||||| |    ||||| ||| |||||| |||  | | ||||||||||||     
T  31048741 catggaaatttgtaagcgatgaaaattaaacaacgacacttggatttatccgtactacaaccaactactcgatcaacctcgattgcaagataatgcaaag 31048840  T
Q  322 atttccttaatatgtttcgaatcaacctaaaccacaaaagctttactttgaatctctgttcaagcatgataatgctcgtctggaaggaag 411  Q
      |||||| ||||||||||||||||||| | |||||  | |||| ||||||| || |||||||||||||| ||||||||| |||||||||    
T  31048841 cgttccttgatatgtttcgaatcaacct-agccacatcaactttcctttgaacctatgttcaagcatgatcatgctcgtccggaaggaag 31048929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 134 - 260
Target Start/End: Complemental strand, 25762142 - 25762016
Alignment:
Q  134 tactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatc 233  Q
    |||||||||||||||||||||||||| || || |||||||||||||||| || ||||  ||| |||||||||||  |||||  || |||||| || ||||    
T  25762142 tactcgaacctcaacctcttccagtgggtgtgaatttcatccaaacggagggcggttccgtttttgatcttcaaaccaatcatacacgcacacggtaatc 25762043  T
Q  234 cgtaagtgatcgaactcaaacaaccac 260  Q
    ||||||||||| |||||||||||||||    
T  25762042 cgtaagtgatcaaactcaaacaaccac 25762016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 129 - 290
Target Start/End: Original strand, 20234852 - 20235015
Alignment:
Q  129 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 228  Q
    |||| |||||||||||||||||||| ||||| || || ||||| |||||| |||||| ||||  |||||||||||||||  |||||  || |||||| ||    
T  20234852 cctcgtactcgaacctcaacctctttcagtgggtgtgaatttcttccaaaaggatggtggttccgttcttgatcttcaaaccaatcatacacgcacacgg 20234951  T
Q  229 caatccgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 290  Q
     || |||||||||||| |||||||||||||||   | |||||||||||||||| ||||| ||||    
T  20234952 taacccgtaagtgatcaaactcaaacaaccacattttgatttatccgtaccaatttcaagtgct 20235015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 129 - 290
Target Start/End: Original strand, 34832140 - 34832303
Alignment:
Q  129 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 228  Q
    |||| ||||||||||||||||||||| |||| || || |||||||||||||||| || ||||  ||| || ||||||||  |||||  || |||||| ||    
T  34832140 cctcgtactcgaacctcaacctcttcaagtgggtgtgaatttcatccaaacggagggcggttccgttttttatcttcaaaccaatcatacacgcacacgg 34832239  T
Q  229 caatccgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 290  Q
     ||||||||||||||| |||||||||||||||   | |||||||||| ||||| ||||| ||||    
T  34832240 taatccgtaagtgatcaaactcaaacaaccacattttgatttatccgcaccaatttcaagtgct 34832303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 126 - 398
Target Start/End: Complemental strand, 11633456 - 11633185
Alignment:
Q  126 caccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcaca 225  Q
    |||| ||||| ||||||  ||||||||||| ||||||  ||||||||||||||||| ||||||  ||||| || |||||||||||||||| || ||||||    
T  11633456 caccatcatattcgaactgcaacctcttcccgtgagt--ggatttcatccaaacggttggggg-gttgttttttatcttcaatgcaatcgtacacgcaca 11633360  T
Q  226 tggcaatccgtaagtgatcgaactcaaacaac--cacctggatttatccgtaccaagttcaactgctcaatcaacatcgtctacgagataatgcaaatat 323  Q
     | |||| ||||  ||||  || | |||||||  ||| | |||||| ||||| ||    ||||||||| |||||| |||| | ||||||||||||||       
T  11633359 cgacaattcgtatatgatgaaaattaaacaaccacacttagatttacccgtatcacacacaactgctcgatcaacctcgtttgcgagataatgcaaagtg 11633260  T
Q  324 ttccttaatatgtttcgaatcaacctaaaccacaaaagctttactttgaatctctgttcaagcatgataatgctc 398  Q
    ||||||  |||| ||| ||||||| || ||||||| | ||||  ||||||  | |||||||||||||| ||||||    
T  11633259 ttccttgttatgcttctaatcaacatagaccacaacaactttcatttgaacatatgttcaagcatgatcatgctc 11633185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 10926099 - 10925990
Alignment:
Q  124 atcaccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgca 223  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||| |||| |||||||||||||| |||||||||| || | ||    
T  10926099 atcaccctcatactcgaacctcaacctcttccaataagtgtggatttcatccaaacgaatgagggtgttgttcttgatctttaatgcaatcgtacacaca 10926000  T
Q  224 catggcaatc 233  Q
    ||||||||||    
T  10925999 catggcaatc 10925990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 134 - 290
Target Start/End: Complemental strand, 30213895 - 30213737
Alignment:
Q  134 tactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatc 233  Q
    |||||||||||||||||||||||||| || || |||||||||||| ||| || ||||  ||| |||||||||||  |||||  || |||||| || ||||    
T  30213895 tactcgaacctcaacctcttccagtgggtgtgaatttcatccaaatggagggcggttccgtttttgatcttcaaaccaatcatacacgcacacggtaatc 30213796  T
Q  234 cgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 290  Q
    ||||||||||| |||| ||||||||||   | |||||||||||||||| ||||| ||||    
T  30213795 cgtaagtgatcaaacttaaacaaccacattttgatttatccgtaccaaattcaagtgct 30213737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 129 - 290
Target Start/End: Complemental strand, 29810328 - 29810165
Alignment:
Q  129 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 228  Q
    |||| ||||| ||||||||| |||||||||| || || ||||| |||||||||| || ||||  |||||||||||||||  |||||  || |||||| ||    
T  29810328 cctcgtactcaaacctcaacatcttccagtgggtgtgaatttcttccaaacggagggaggttgcgttcttgatcttcaaatcaatcatacacgcacacgg 29810229  T
Q  229 caatccgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 290  Q
     ||||||||| ||||| |||||||||||||||   | |||||||||||||||| ||||| ||||    
T  29810228 taatccgtaaatgatcaaactcaaacaaccacattttgatttatccgtaccaatttcaagtgct 29810165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 26264758 - 26264667
Alignment:
Q  124 atcaccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcg 215  Q
    ||||||||||||||  |||| |||| ||||||||||||| |||||||||||||  | ||||||||| |||||||||||||||||||||||||    
T  26264758 atcaccctcatactataaccgcaacttcttccagtgagtgtggatttcatccacccagatgggggtgttgttcttgatcttcaatgcaatcg 26264667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 437
Target Start/End: Complemental strand, 26264660 - 26264486
Alignment:
Q  262 tggatttatccgtaccaagttcaactgctcaatcaacatcgtctacgagataatgcaaatatttccttaatatgtttcgaatcaacctaaaccacaaaag 361  Q
    |||||||||||||||||    ||| ||||| | |||| |||| | ||||||||||||||   |||||| |||||||||||||||| ||| ||||| | |     
T  26264660 tggatttatccgtaccacaaccaattgctcgaccaacctcgtttgcgagataatgcaaagtgttccttgatatgtttcgaatcaatctagaccacgacaa 26264561  T
Q  362 ctttactttgaatctctgttcaagcatgataatgctcgtctggaaggaagcgtgcagctgagtatgttgtagctct 437  Q
    |||| ||||||  || ||||||| |||||| |||||||||| |||||||||||| | || ||||||||||| ||||    
T  26264560 cttt-ctttgagcctatgttcaaacatgatcatgctcgtctagaaggaagcgtgtatcttagtatgttgtaactct 26264486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 129 - 290
Target Start/End: Original strand, 17310717 - 17310880
Alignment:
Q  129 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 228  Q
    |||| ||||||||||||||||| |||||||| || || ||||| |||||||  | || |||   |||||||||||||||  || ||  || |||||| ||    
T  17310717 cctcgtactcgaacctcaacctattccagtgggtgtgaatttcttccaaacatagggtggtaccgttcttgatcttcaaatcattcatacacgcacacgg 17310816  T
Q  229 caatccgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 290  Q
     ||||||||||||||| |||||||||||||||   | |||||||||||||||| ||||| ||||    
T  17310817 taatccgtaagtgatcaaactcaaacaaccacattttgatttatccgtaccaatttcaagtgct 17310880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 399
Target Start/End: Original strand, 21198977 - 21199068
Alignment:
Q  308 gagataatgcaaatatttccttaatatgtttcgaatcaacctaaaccacaaaagctttactttgaatctctgttcaagcatgataatgctcg 399  Q
    |||||||||||||   ||| || ||||||||| ||||||| || ||||||| | |||| | ||||| || |||||||||||||| |||||||    
T  21198977 gagataatgcaaagtgttctttgatatgtttctaatcaacttagaccacaacaacttttcgttgaacctatgttcaagcatgatcatgctcg 21199068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 23255163 - 23255032
Alignment:
Q  129 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 228  Q
    |||| |||||||||||||||||||||||||| || || ||||| |||||||| | || ||||  |||||||||||||||  |||||  || |||||| ||    
T  23255163 cctcgtactcgaacctcaacctcttccagtgggtgtgaatttcttccaaacgaagggtggttccgttcttgatcttcaaaccaatcatacacgcacacgg 23255064  T
Q  229 caatccgtaagtgatcgaactcaaacaaccac 260  Q
     ||||||||||||||| |||||||||||||||    
T  23255063 taatccgtaagtgatcaaactcaaacaaccac 23255032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 134 - 290
Target Start/End: Complemental strand, 756338 - 756180
Alignment:
Q  134 tactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatc 233  Q
    ||||||||||||||||||||||||||||| || |||||||| ||||||| || ||| | ||||||||||||||| | ||||  ||  ||||| || ||||    
T  756338 tactcgaacctcaacctcttccagtgagtgtgaatttcatcgaaacggagggtggtgtcgttcttgatcttcaaagtaatcatacatgcacacggtaatc 756239  T
Q  234 cgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 290  Q
    |||| |||||| |||| ||||| ||||   | |||||||||||||||| ||||| ||||    
T  756238 cgtatgtgatcaaactgaaacacccacattttgatttatccgtaccaatttcaagtgct 756180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 412
Target Start/End: Complemental strand, 755888 - 755780
Alignment:
Q  304 ctacgagataatgcaaatatttccttaatatgtttcgaatcaacctaaaccacaaaagctttactttgaatctctgttcaagcatgataatgctcgtctg 403  Q
    |||| |||| |||||||  || |||| | ||||||| ||||||| || ||||||| | |||| |||||||    ||||||||||||||||||||||||||    
T  755888 ctacaagatgatgcaaaacttcccttgaaatgtttccaatcaacttagaccacaacacctttcctttgaactgatgttcaagcatgataatgctcgtctg 755789  T
Q  404 gaaggaagc 412  Q
     || |||||    
T  755788 aaacgaagc 755780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 129 - 290
Target Start/End: Complemental strand, 19217551 - 19217388
Alignment:
Q  129 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 228  Q
    |||| ||||||||||||||||||||||| || || || ||||| ||||||| || || ||||  |||||||||||||||  |||||  ||  ||||| ||    
T  19217551 cctcgtactcgaacctcaacctcttccaatgggtgtgaatttcttccaaacagagggtggttccgttcttgatcttcaaaccaatcatacaagcacacgg 19217452  T
Q  229 caatccgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 290  Q
     ||||||||||||||| |||||||||||||||   | |||||||||||||||| ||||| ||||    
T  19217451 taatccgtaagtgatcaaactcaaacaaccacattttgatttatccgtaccaatttcaagtgct 19217388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 290
Target Start/End: Original strand, 41255691 - 41255844
Alignment:
Q  139 gaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatccgtaa 238  Q
    ||||||||||||||||||||| || || |||||||||||||||| ||  |||  ||| |||||||||||  |||||  || |||||| || |||||||||    
T  41255691 gaacctcaacctcttccagtgggtgtgaatttcatccaaacggagggcagttccgtttttgatcttcaaaccaatcatacacgcacacggtaatccgtaa 41255790  T
Q  239 gtgatcgaactcaaacaacc--acctggatttatccgtaccaagttcaactgct 290  Q
    |||||| |||||||||||||  |  | |||||||||||||||| ||||| ||||    
T  41255791 gtgatcaaactcaaacaaccatattttgatttatccgtaccaatttcaagtgct 41255844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 260
Target Start/End: Complemental strand, 15892392 - 15892266
Alignment:
Q  134 tactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatc 233  Q
    ||||||||||||||||||||||| ||||| || |||||||||||| ||| || |||    |||||||||||| |  |||||  || |||||| || ||||    
T  15892392 tactcgaacctcaacctcttccaatgagtgtgaatttcatccaaatggagggcggtgccattcttgatcttcgaatcaatcatacacgcacacggtaatc 15892293  T
Q  234 cgtaagtgatcgaactcaaacaaccac 260  Q
    || |||||||| |||| ||||||||||    
T  15892292 cggaagtgatcaaactgaaacaaccac 15892266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 402
Target Start/End: Original strand, 25010867 - 25010967
Alignment:
Q  302 gtctacgagataatgcaaatatttccttaatatgtttcgaatcaacctaaaccacaaaagctttactttgaatctctgttcaagcatgataatgctcgtc 401  Q
    ||||||||||||||||||||  |||||| |||| |||| ||||||| || ||||||| |  ||| ||||||| || |||| ||||||||| |||||||||    
T  25010867 gtctacgagataatgcaaatcgttccttgatatctttctaatcaacttagaccacaataattttcctttgaacctatgtttaagcatgatcatgctcgtc 25010966  T
Q  402 t 402  Q
    |    
T  25010967 t 25010967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 25010687 - 25010742
Alignment:
Q  124 atcaccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaac 179  Q
    |||||| | ||||||||||| |||||||||||||||||| || |||||||||||||    
T  25010687 atcacctttatactcgaaccacaacctcttccagtgagtatgaatttcatccaaac 25010742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 403
Target Start/End: Complemental strand, 2273139 - 2273018
Alignment:
Q  282 tcaactgctcaatcaacatcgtctacgagataatgcaaatatttccttaatatgtttcgaatcaacctaaaccacaaaagctttactttgaatctctgtt 381  Q
    |||||||||| |||||  |||||| ||||||| ||| ||   |||||| ||||||| || ||||||||| | ||| ||| |||| || |||| || ||||    
T  2273139 tcaactgctcgatcaaactcgtctgcgagatagtgcgaagtgttccttgatatgttccggatcaacctagatcacgaaacctttcctctgaacctatgtt 2273040  T
Q  382 caagcatgataatgctcgtctg 403  Q
    || |||||||||||||| ||||    
T  2273039 caggcatgataatgctcctctg 2273018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 25478838 - 25478947
Alignment:
Q  70 caaatctcattctgataacagagagatgtcttccttcctatccttcatatatatatcaccctcatactcgaacctcaacctcttccagtgagtttggatt 169  Q
    |||||| ||||| | ||||||||||||||| ||||||||||||||| |||      ||||||||||||||||||||||||| |||  |||||| ||||||    
T  25478838 caaatcccattccggtaacagagagatgtcgtccttcctatccttcgtat------caccctcatactcgaacctcaacctgttctggtgagtgtggatt 25478931  T
Q  170 tcatccaaacggatgg 185  Q
    | ||||||| ||||||    
T  25478932 taatccaaatggatgg 25478947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 136 - 290
Target Start/End: Complemental strand, 48095106 - 48094950
Alignment:
Q  136 ctcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatggcaatccg 235  Q
    ||||||| ||||||||||||| || || || |||||||||||||||| || ||||   || || ||||||||  |||||  || |||||| || ||||||    
T  48095106 ctcgaacatcaacctcttccaatgggtgtgaatttcatccaaacggagggcggttccattttttatcttcaaaccaatcatacacgcacacggtaatccg 48095007  T
Q  236 taagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 290  Q
    ||||||||| |||||||||||||||   | |||||||| ||||||| ||||| ||||    
T  48095006 taagtgatcaaactcaaacaaccacattttgatttatctgtaccaatttcaagtgct 48094950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 5158465 - 5158581
Alignment:
Q  124 atcaccctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgca 223  Q
    |||||| ||||| ||||||  ||| ||||||| |||||| || |||||||||||||||| |||||| |||||||||||||||   ||||||||||  |||    
T  5158465 atcaccttcatattcgaacaacaatctcttccggtgagtgtgaatttcatccaaacggaggggggtgttgttcttgatcttcttggcaatcgcacatgca 5158564  T
Q  224 catggcaatccgtaagt 240  Q
    ||   ||||||||||||    
T  5158565 cacaacaatccgtaagt 5158581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 290
Target Start/End: Original strand, 52970661 - 52970823
Alignment:
Q  129 cctcatactcgaacctcaacctcttccagtgagtttggatttcatccaaacggatgggggttttgttcttgatcttcaatgcaatcgcacccgcacatgg 228  Q
    |||| ||||| ||||||||||||||| |||| || || ||||| |||||||||| || |||   |||||||||||||||  |||||  || | |||| ||    
T  52970661 cctcgtactcaaacctcaacctcttctagtgggtgtgaatttcttccaaacggagggtggtaccgttcttgatcttcaaaccaatcatacac-cacacgg 52970759  T
Q  229 caatccgtaagtgatcgaactcaaacaaccac--ctggatttatccgtaccaagttcaactgct 290  Q
     ||||||||||||||| |||||||||||||||   | |||||||| ||||||| ||||| ||||    
T  52970760 taatccgtaagtgatcaaactcaaacaaccacattttgatttatctgtaccaatttcaattgct 52970823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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