View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11014_low_15 (Length: 441)
Name: NF11014_low_15
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11014_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 278 - 435
Target Start/End: Original strand, 1155306 - 1155463
Alignment:
| Q |
278 |
cctaattaccttagcgatgttaaggtagaagaagagaggcttcttagtcttggaaacttgaatacgatagatcttcttctctttctcgatctcgccgcca |
377 |
Q |
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| T |
1155306 |
cctaattaccttagcgatgttaaggtagaagaagagtggcttcttagtcttggaaacttgaatacgatagatcttcttctctttctcgatctcgccgcca |
1155405 |
T |
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| Q |
378 |
ttgatcttcacattcttcgtcgcaccggttagaactgcaatcgcttctttcatctcac |
435 |
Q |
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| T |
1155406 |
ttgatcttcacattcttcgtcgcaccggttagaactgcaatcgcttctttcatctcac |
1155463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 1155017 - 1155260
Alignment:
| Q |
9 |
acatcatcaagaacaacgcttaaaccgaacagaatcaagtaaaggagtttttatcttaaaatttcagcttatcaattacataatc---------gcttaa |
99 |
Q |
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| T |
1155017 |
acataatcaagaacaacgcttaaaccgaacagaatcaagtaaaggagtttttatctaaaaaattcagcttattaattacataatcaagaacaacgcttaa |
1155116 |
T |
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| Q |
100 |
acctaatcagaatcaaagaaag------------taaaaggattaaagaaaattataccagttcccaaagcacagagctcaacatcattatccagcttca |
187 |
Q |
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| T |
1155117 |
accgaa-cagaatcaagtaaaggagtttttatcttaaaaggattaaagaaaattataccagttcccaaagcacagagctcaacatcattatccagcttca |
1155215 |
T |
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| Q |
188 |
agtgtttctgaatcagaaagaaacacgaaattcataatcagaaat |
232 |
Q |
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| T |
1155216 |
agtgtttctgaatcagaaagaaacacgaaatccataatcagaaat |
1155260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 1154939 - 1155024
Alignment:
| Q |
9 |
acatcatcaagaacaacgcttaaaccgaa-cagaatcaagtaaaggagtttttatcttaaaatttcagcttatcaattacataatc |
93 |
Q |
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| T |
1154939 |
acataatcaagaacaacgcttaaaccgaatcagaatcaagtaaatgagtttttatctcaaaatttcagcttatcaattacataatc |
1155024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 1154906 - 1154946
Alignment:
| Q |
53 |
gagtttttatcttaaaatttcagcttatcaattacataatc |
93 |
Q |
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| T |
1154906 |
gagtttttaccctaaaatttcagcttatcagttacataatc |
1154946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 38665051 - 38664985
Alignment:
| Q |
147 |
agttcccaaagcacagagctcaacatcattatccagcttcaagtgtttctgaatcagaaagaaacac |
213 |
Q |
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| T |
38665051 |
agttcccaaagcatagagctcaacatcattatccagcttcaagtgtttctgaatcagaaagaaacac |
38664985 |
T |
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