View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11014_low_16 (Length: 434)

Name: NF11014_low_16
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11014_low_16
NF11014_low_16
[»] chr1 (1 HSPs)
chr1 (131-425)||(23809549-23809843)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 131 - 425
Target Start/End: Original strand, 23809549 - 23809843
Alignment:
Q  131 agttagttttaagctatagcttaagaatttgccgggtaattgatatttattgtcatgtttttcttatgcttgatagttaaattcttattttgatagtcaa 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23809549 agttagttttaagctatagcttaagaatttgccgggtaattgatatttattgtcatgtttttcttatgcttgatagttaaattcttattttgatagtcaa 23809648  T
Q  231 catgggttttgagaaaaattattgagaatcaannnnnnnnncctcaatactttctatatctgttaatattttttccgtgtagtatttctactttttcaat 330  Q
    ||||||||||||||||||||||||||||||||         |||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  23809649 catgggttttgagaaaaattattgagaatcaatttttttttcctcaatactttctatatttgttaatattttttccgggtagtctttctactttttcaat 23809748  T
Q  331 tttaattattttggatctctcgttaaataatactctagtgtttttcaaaatgatagctaattgcatttttaatttctttaattcatagttctctg 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23809749 tttaattattttggatctctcgttaaataatactctagtgtttttcaaaatgatagctaattgcatttttaatttctttaattcatagttctctg 23809843  T

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