View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11014_low_19 (Length: 398)
Name: NF11014_low_19
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11014_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 31169893 - 31170260
Alignment:
| Q |
11 |
cagagagctattgggaacgaattcaaaatgaagaacctgaacaagttggaggcaaaaagagaaaaccatatagaatagagcttgttggagtagtatgtga |
110 |
Q |
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| T |
31169893 |
cagagagctattgggaacgaattgaaaatgaagaacctgaacaagttggaggcaaaaagagaaaaccatatagaatagagcttgttggagtagtatgtga |
31169992 |
T |
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| Q |
111 |
tgcttaccttgcagtcattagaggcataaggtagattcacttcattattaaccttcatattcaacaaacttacatattaatcataattcttttagtgaaa |
210 |
Q |
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| T |
31169993 |
tgcttaccttgcagtcattagaggcataaggtagattcacttcattattaaccttcatattcaacaaacttacatattaatcataattattttagtgaaa |
31170092 |
T |
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| Q |
211 |
atgggacaatcctgccactgcggtctgacacatcgatggttgttcgataaagatcatacagtccagatttcaatgtagattttgannnnnnnnnnnaaaa |
310 |
Q |
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| T |
31170093 |
atgggacaatcctgccactgcggtctgacacatcgatggttgttcgataaagatcatacagtccagatatcaatgtagattttgaatttttttt---aaa |
31170189 |
T |
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| Q |
311 |
ataaaaacaagtttgaaatacgagccatctcatattgatcgaacac-tatgagtgtagctgactgcttgtg |
380 |
Q |
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| T |
31170190 |
ataaaaacaagtttgaaatacgagccatctcatattgaccgaacacttatgagtgtagctgactgcttgtg |
31170260 |
T |
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Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 38627037 - 38626913
Alignment:
| Q |
18 |
ctattgggaacgaattcaaaatgaagaacctgaacaagttggaggcaaaaagagaaaaccatatagaatagagcttgttggagtagtatgtgatgcttac |
117 |
Q |
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| T |
38627037 |
ctattgggaacgaattaaagatgaggaacctgaacaggttggaggaaaaaagagaaaaccatacagaatcgagctagttggagtagtgtgtgatgcttac |
38626938 |
T |
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| Q |
118 |
cttgcagtcattagaggcataaggt |
142 |
Q |
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| T |
38626937 |
cttgctgttgttagaggcataaggt |
38626913 |
T |
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